| Sequence ID | dm3.chrX |
|---|---|
| Location | 8,100,682 – 8,100,777 |
| Length | 95 |
| Max. P | 0.876373 |
| Location | 8,100,682 – 8,100,777 |
|---|---|
| Length | 95 |
| Sequences | 5 |
| Columns | 102 |
| Reading direction | reverse |
| Mean pairwise identity | 86.62 |
| Shannon entropy | 0.23564 |
| G+C content | 0.53458 |
| Mean single sequence MFE | -34.00 |
| Consensus MFE | -30.65 |
| Energy contribution | -30.70 |
| Covariance contribution | 0.05 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.49 |
| Structure conservation index | 0.90 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.02 |
| SVM RNA-class probability | 0.876373 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 8100682 95 - 22422827 ------UACCGGGUUAUU-CGGGUUUGGCGCAGCUCUUGAUGCGGUUAAUGCGUGGAAUACCAUCCAUUCCAUCGCAAUGAGAGCCACUCGAACUUCGCGAU ------...((.(...((-(((((..(((....(((....((((((.((((.((((....)))).))))..))))))..))).))))))))))...).)).. ( -31.20, z-score = -1.33, R) >droEre2.scaffold_4690 10468508 96 - 18748788 -----AUUCCGGGGCAUU-CGGGUUUGGCGCAGCUCUUGAUGCGGUUAAUGCGUGGAAUACCAUCCAUUCCAUCGCAAUGAGAGCCCCUCGAACUCAGCGUU -----.............-.((((((((.(..(((((((.((((((.((((.((((....)))).))))..)))))).)))))))..)))))))))...... ( -31.90, z-score = -0.66, R) >droYak2.chrX 8557017 95 + 21770863 GCUUGAUUCUAGGGUAUUCCGGGUUUGGCGCAGCUCUCGAUGCGGUUAAUGCGUA-------AUCCAUUCCAUCGCAAUGAGAGCCUCUCGAACUCCGCGAU ((..........((....))((((((((.(..(((((((.((((((.((((.(..-------..)))))..)))))).)))))))..))))))).))))... ( -30.90, z-score = -0.96, R) >droSec1.super_44 191995 101 - 251150 GGGUAACACCGGGUUAUU-CGGGUUUGGCGCAGCUCUCGAUGCGGUUAAUGCGUGGAAUACCAUCCAAUCCAUCGCAAUGAGAGCCACUCGAACUCCGCGAU (((((((.....))))))-)((((((((.(..(((((((.((((((...((.((((....)))).))....)))))).)))))))..))))))).))..... ( -36.80, z-score = -1.90, R) >droSim1.chrX 6455964 101 - 17042790 GGGUAACACCGGGUUAUU-CGGGUUUGGCGCAGCUCUCGAUGCGGUUAAUGCGUGGAAUACCAUCCAUUCCAUCGCAAUGAGAGCCACUCGAACUCCGCGAU (((((((.....))))))-)((((((((.(..(((((((.((((((.((((.((((....)))).))))..)))))).)))))))..))))))).))..... ( -39.20, z-score = -2.59, R) >consensus G__U_AUACCGGGUUAUU_CGGGUUUGGCGCAGCUCUCGAUGCGGUUAAUGCGUGGAAUACCAUCCAUUCCAUCGCAAUGAGAGCCACUCGAACUCCGCGAU ....................((((((((.(..(((((((.((((((.((((.((((....)))).))))..)))))).)))))))..)))))))))...... (-30.65 = -30.70 + 0.05)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:25:12 2011