| Sequence ID | dm3.chrX |
|---|---|
| Location | 8,095,036 – 8,095,125 |
| Length | 89 |
| Max. P | 0.548230 |
| Location | 8,095,036 – 8,095,125 |
|---|---|
| Length | 89 |
| Sequences | 5 |
| Columns | 101 |
| Reading direction | reverse |
| Mean pairwise identity | 61.74 |
| Shannon entropy | 0.69990 |
| G+C content | 0.41462 |
| Mean single sequence MFE | -28.24 |
| Consensus MFE | -5.20 |
| Energy contribution | -6.00 |
| Covariance contribution | 0.80 |
| Combinations/Pair | 1.67 |
| Mean z-score | -2.31 |
| Structure conservation index | 0.18 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.11 |
| SVM RNA-class probability | 0.548230 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 8095036 89 - 22422827 AUACAUGGAUGUACAUAUGAAUGU---------ACAUGGAUGUACAUACAAAAUGGGUGGGUGAAAAGUA---GCCGCCAACUUCCUGGGUUUCCAAACUG .....(((((((((((....))))---------))).(((.((.(((.....)))(((((.((.....))---.))))).)).)))......))))..... ( -23.10, z-score = -0.72, R) >droSec1.super_44 177725 88 - 251150 AUACACGGAUGUACAUAUGAAUGUA-CAUGGAUGUACAUA--------CAAAAU-GAUGGGUGAAAAGUA---CCCGCCAACUUCCUGAUUUUCCAAACUG ......((((((((((....)))))-)).((((((....)--------))...(-(.((((((.....))---)))).))...)))......)))...... ( -19.60, z-score = -1.24, R) >droYak2.chrX 8551152 100 + 21770863 AUGCAUGGAUGUACAUAUGAAUGUAGUACAUACAUACAUAUGUACAUACAAAAU-GGUGGGUGAAAAGUACCUGCCACCAACUUCCUGGUUUUCCAAACUG .....((((((((((((((.(((((.....))))).)))))))))))......(-((..((((.....))))..))))))......(((....)))..... ( -34.30, z-score = -3.65, R) >droEre2.scaffold_4690 10463091 96 - 18748788 AUACAGGGAUGUACAUAUGAAUGUA-CAUACGUGUACGUACAUACGUGCAAAGU-GGUGGGUGAAAAGCA---CCCACCAACUUCCUGCAUUUCCAAACUG ...(((((((((((.((((.(((((-((....))))))).)))).)))))...(-((((((((.....))---)))))))..))))))............. ( -39.90, z-score = -5.24, R) >droVir3.scaffold_12970 8418185 86 - 11907090 --------GCGCAAAU-UGUAUGCA-CAACGCUGCUCAAAC-UGUGCGCAUAG--GUUGAACAGCCACUGUGAGCAAACA--UGCUUAAGUAUUCAACUUG --------(((((..(-((...(((-......))).)))..-..))))).(((--((((((.....(((.((((((....--))))))))).))))))))) ( -24.30, z-score = -0.70, R) >consensus AUACAUGGAUGUACAUAUGAAUGUA_CAUAGAUGUACAUAC_UACAUACAAAAU_GGUGGGUGAAAAGUA___GCCACCAACUUCCUGAGUUUCCAAACUG ........(((((..((((.((((.......)))).))))..)))))........(((((..............)))))...................... ( -5.20 = -6.00 + 0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:25:11 2011