| Sequence ID | dm3.chrX |
|---|---|
| Location | 8,094,563 – 8,094,667 |
| Length | 104 |
| Max. P | 0.773699 |
| Location | 8,094,563 – 8,094,667 |
|---|---|
| Length | 104 |
| Sequences | 5 |
| Columns | 108 |
| Reading direction | reverse |
| Mean pairwise identity | 74.00 |
| Shannon entropy | 0.45881 |
| G+C content | 0.32441 |
| Mean single sequence MFE | -19.22 |
| Consensus MFE | -10.68 |
| Energy contribution | -12.60 |
| Covariance contribution | 1.92 |
| Combinations/Pair | 1.22 |
| Mean z-score | -1.54 |
| Structure conservation index | 0.56 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.65 |
| SVM RNA-class probability | 0.773699 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 8094563 104 - 22422827 GUUGCUUACUUUUGGCCCUGGCCUUUAGCACAGAAAGAGUGAGCAGGAAAAUAAUAACAAGGAAAAUAGCAAAAAGAUAUAGAAA--A--AAUAAUGAAAAAAAAUAA .((((((((((((....(((((.....)).))).)))))))))))).......................................--.--.................. ( -17.70, z-score = -1.51, R) >droSim1.chrX_random 2432249 102 - 5698898 GUUGCUUACUUUUGGCCCUGGCCUUGAGCACAGAAAGAGUGAGCAGCAAAAUAAUAACGAGGAAAAUAGCCAAAAGAUACAGAAA--A--AAUAAUGAAAAUAUAA-- ((((((((((((((((....)))(((....))).))))))))))))).............((.......))..............--.--................-- ( -22.10, z-score = -2.81, R) >droSec1.super_44 177255 102 - 251150 GUUGCUUACUUUUGGCCCUGGCCUUUAGCACAGAAAGAGUGAGCAGCAAAAUAAUAACAAGGAAAAUAGCAAAAAGAUACAAAAA--A--AAUAAUGAAAAUAUAA-- (((((((((((((....(((((.....)).))).)))))))))))))......................................--.--................-- ( -21.40, z-score = -2.58, R) >droYak2.chrX 8550656 104 + 21770863 GUUGCUUACUUUUGGCCCUGGCCUUUAGCACAGACAGAGUGCACAGCAAAAUAAUAACAAGGAAAAUAACAAAAAGAUACAGAAACAA--AAUAAUGAAAAAAUAA-- .(((((.......(((....)))....((((.......))))..))))).......................................--................-- ( -14.70, z-score = -0.52, R) >droVir3.scaffold_12963 1716002 106 - 20206255 AUUUUUUUUUUUUUUUGCUUUCUUACUGCACUGCAGCAGUUCGCAUUGAGGACAUAUAAUUGAAGAUUGCAUAAAUAUGUAGCCUUAAUUAGGAAUAAGAGCACUG-- ...............((((((((((((((......)))).....(((((((((((((...((.......))...))))))..))))))))))))....)))))...-- ( -20.20, z-score = -0.27, R) >consensus GUUGCUUACUUUUGGCCCUGGCCUUUAGCACAGAAAGAGUGAGCAGCAAAAUAAUAACAAGGAAAAUAGCAAAAAGAUACAGAAA__A__AAUAAUGAAAAAAUAA__ (((((((((((((....(((((.....)).))).)))))))))))))............................................................. (-10.68 = -12.60 + 1.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:25:11 2011