| Sequence ID | dm3.chrX |
|---|---|
| Location | 8,087,627 – 8,087,734 |
| Length | 107 |
| Max. P | 0.738609 |
| Location | 8,087,627 – 8,087,734 |
|---|---|
| Length | 107 |
| Sequences | 6 |
| Columns | 110 |
| Reading direction | reverse |
| Mean pairwise identity | 71.48 |
| Shannon entropy | 0.50212 |
| G+C content | 0.40145 |
| Mean single sequence MFE | -27.82 |
| Consensus MFE | -14.36 |
| Energy contribution | -13.32 |
| Covariance contribution | -1.05 |
| Combinations/Pair | 1.56 |
| Mean z-score | -1.43 |
| Structure conservation index | 0.52 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.55 |
| SVM RNA-class probability | 0.738609 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 8087627 107 - 22422827 AAAGGCAUGCAGGUUUGACUGUUGUAUCCAUUG-GUACAUAGAAACCCGUAUAUAUGUACAUAUGUAUGCAUCUAUGCGGCUGUACAUUCAUAUCUGUGUGUCUGUGG-- ..((((((((((((.(((.(((.(((((....)-))))((((....(((((((.(((((........))))).)))))))))))))).))).))))))))))))....-- ( -36.00, z-score = -2.41, R) >droSim1.chrX 6448261 97 - 17042790 AAAGGCAUGCAGGUUCGACUGUUGUAUCCAUUG-GUACAUAGAAA-CC-------CGUAUAUAUGUAUGUGUUUAUGCGGCUGUACAU--AUGUGUGUGUGUCUGUGG-- ..(((((((((((((...((((.(((((....)-)))))))).))-))-------..((((((((((((.(((.....))))))))))--))))))))))))))....-- ( -28.40, z-score = -0.84, R) >droSec1.super_44 170489 95 - 251150 AAAGGCAUGCAGGUUCGACUGUUGUAUCCAUUG-GUACAUAGAAA-CC-------CGUAUAUAUGUAUGUGUUUAUGCGGCUGUACAU--A--UGUGUGUGUCUGUGG-- ..(((((((((((((...((((.(((((....)-)))))))).))-))-------.(((((..((((((....))))))..)))))..--.--..)))))))))....-- ( -26.90, z-score = -0.59, R) >droYak2.chrX 8543426 87 + 21770863 AAAGGCAUGCAGGUUCGACUGUAGUAUCCAUUG-GUACACAGAAA-CC-------CGUAUAUAUGCA----UUUAUGCGGCUGUA--------UCUGUGUGUCUGUGG-- ....((.(((((......)))))))..((((.(-..(((((((.(-((-------((((((......----..)))))))..)).--------)))))))..).))))-- ( -32.00, z-score = -3.13, R) >droEre2.scaffold_4690 10456008 89 - 18748788 AGAGUCAUGCAGGUUCGCCUGUGGUAUCCAUUGCAUAUAUAGAAACCC-------CGUAUGUAUGUA----UUUAUGUGGCUGUA--------UCUGUGUGUCUGUGG-- ..((.(((((((((..(((.((((...))))(((((((((((......-------).))))))))))----.......)))...)--------)))))))).))....-- ( -25.60, z-score = -1.50, R) >droWil1.scaffold_181096 5570683 94 + 12416693 AUAGGUAGAAAGGUACUCAUACUAUGUAC-CUAUAUAUAUAUAUAUU--------UGUAUAU-UGUA--UAGCUAUGAAUCAGUG----GACUUUUGUUUCUCUCUGAAU .(((..((((((((((.........))))-)((((((((((((....--------)))))).-))))--)).((((......)))----).......)))))..)))... ( -18.00, z-score = -0.12, R) >consensus AAAGGCAUGCAGGUUCGACUGUUGUAUCCAUUG_GUACAUAGAAA_CC_______CGUAUAUAUGUA__U_UUUAUGCGGCUGUA_____A__UCUGUGUGUCUGUGG__ ..(((((((((((.....((((.((((.......)))))))).............((((((............))))))..............)))))))))))...... (-14.36 = -13.32 + -1.05)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:25:10 2011