| Sequence ID | dm3.chr2L |
|---|---|
| Location | 10,576,283 – 10,576,382 |
| Length | 99 |
| Max. P | 0.808371 |
| Location | 10,576,283 – 10,576,382 |
|---|---|
| Length | 99 |
| Sequences | 3 |
| Columns | 103 |
| Reading direction | reverse |
| Mean pairwise identity | 86.80 |
| Shannon entropy | 0.17831 |
| G+C content | 0.34026 |
| Mean single sequence MFE | -14.13 |
| Consensus MFE | -13.11 |
| Energy contribution | -13.44 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.33 |
| Structure conservation index | 0.93 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.76 |
| SVM RNA-class probability | 0.808371 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 10576283 99 - 23011544 UAGAUCGUUGCUCCAUCUAGCACAGACU-CACACAAAAGUAAUGAUCAAAAUUAACUAAACACACUACAUUUAUCUACAAUGAAAGGAUUGUUAUUCCUG--- ..((((((((((................-........)))))))))).....................................((((.......)))).--- ( -13.36, z-score = -0.87, R) >droSec1.super_3 6002368 88 - 7220098 UAGAUCGUUGCUCCAUCUAG---------CACA-AAAAGUAAUGAUCAAAA-UAACUGAACACACUACA-UUAUCUACAAUGAAAGGAUUGCUAAUCCUG--- ..((((((((((........---------....-...))))))))))....-...............((-((......))))..(((((.....))))).--- ( -15.06, z-score = -2.23, R) >droSim1.chr2L 10380135 101 - 22036055 UAGAUCGUUGCUCCAUCUAGCACAGACUCCACA-AAAAGUAAUGAUCAAAAUUAACUGAACACACUACA-AUAUCUACAAUGAAAGGAUUGUUAAUCCUACUG ..((((((((((.....................-...))))))))))......................-..............(((((.....))))).... ( -13.96, z-score = -0.90, R) >consensus UAGAUCGUUGCUCCAUCUAGCACAGACU_CACA_AAAAGUAAUGAUCAAAAUUAACUGAACACACUACA_UUAUCUACAAUGAAAGGAUUGUUAAUCCUG___ ..((((((((((.........................)))))))))).....................................(((((.....))))).... (-13.11 = -13.44 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:30:32 2011