| Sequence ID | dm3.chrX |
|---|---|
| Location | 8,055,497 – 8,055,594 |
| Length | 97 |
| Max. P | 0.791600 |
| Location | 8,055,497 – 8,055,594 |
|---|---|
| Length | 97 |
| Sequences | 3 |
| Columns | 97 |
| Reading direction | forward |
| Mean pairwise identity | 93.10 |
| Shannon entropy | 0.09467 |
| G+C content | 0.32879 |
| Mean single sequence MFE | -18.17 |
| Consensus MFE | -15.36 |
| Energy contribution | -15.20 |
| Covariance contribution | -0.16 |
| Combinations/Pair | 1.14 |
| Mean z-score | -2.01 |
| Structure conservation index | 0.85 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.70 |
| SVM RNA-class probability | 0.791600 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 8055497 97 + 22422827 UGGACAUGCCAACUCCGGUGAACUGGAGCUACUUAAUUUUUUUGGAAUUUCUCAAACAAUUGUUAAUAAAUAUUUGGCAACUUAUACUAAUUUAUUG ......((((((((((((....)))))).....(((((.(((.((.....)).))).)))))...........)))))).................. ( -19.20, z-score = -2.59, R) >droSim1.chrX_random 2413168 96 + 5698898 UGGACAUGCCGACUCCGGCGAACUGGAGCAACUUAAUGUUUU-GGAAUUUCUCAAACAAUUAUUAAUAAAUAUUUGGCAACUAACACUAAUUUAUUG ......((((((((((((....))))))........(((((.-((.....)).)))))...............)))))).................. ( -19.00, z-score = -2.57, R) >droSec1.super_44 141746 96 + 251150 UGGACAUGUCGACUCCGGCGAACUGGAGCAAUUUAAUGUUUU-GGAAUUUCUCAAACAAUUGUUAAUAAAUAUUUGGCAACUAACACUAAUUUAUUG ......((((((((((((....))))))........(((((.-((.....)).)))))...............)))))).................. ( -16.30, z-score = -0.87, R) >consensus UGGACAUGCCGACUCCGGCGAACUGGAGCAACUUAAUGUUUU_GGAAUUUCUCAAACAAUUGUUAAUAAAUAUUUGGCAACUAACACUAAUUUAUUG ......((((((((((((....)))))).....((((..(((.((.....)).)))..))))...........)))))).................. (-15.36 = -15.20 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:25:03 2011