| Sequence ID | dm3.chrX |
|---|---|
| Location | 8,000,210 – 8,000,306 |
| Length | 96 |
| Max. P | 0.893377 |
| Location | 8,000,210 – 8,000,306 |
|---|---|
| Length | 96 |
| Sequences | 4 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 75.08 |
| Shannon entropy | 0.35515 |
| G+C content | 0.42499 |
| Mean single sequence MFE | -20.87 |
| Consensus MFE | -18.06 |
| Energy contribution | -17.38 |
| Covariance contribution | -0.69 |
| Combinations/Pair | 1.22 |
| Mean z-score | -1.29 |
| Structure conservation index | 0.87 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.11 |
| SVM RNA-class probability | 0.893377 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 8000210 96 - 22422827 -----------------UGACCUGCUCCGUCAUAUCGUUUAUGCAAUUGCACUGCAAAUGCAAAUUACCAACUGCAAUUG------UCUCGAUUGCAGUUUUUCAUGUUCAGCCGAAUG -----------------((((.......))))..(((....((((.((((...)))).)))).......(((((((((((------...))))))))))).............)))... ( -22.40, z-score = -1.56, R) >droYak2.chrX 8460549 104 + 21770863 CUCAUCUCCCUUCGCCAUGGGCCAUCCACUCAUAUCGUUUAUGCAAUUGCACUGCAAAUGCAAAUUACCAAUUGCAAUUG------CCUCGAUUGCUGUUUUCUAUGUUU--------- .......(((........))).........((((........(((((((....((((.(((((........))))).)))------)..))))))).......))))...--------- ( -20.36, z-score = -1.32, R) >droSec1.super_44 84091 93 - 251150 -----------------UGGCCUCCUCAGUCAUAUCGUUUAUGCAAUUGCACUGCGAAUGCAAAUUACCAACUGCAAUUGCAAUUGCCUCGAUUGCAGUUUUCCAUGUUC--------- -----------------(((........(.(((.((((...(((....)))..))))))))........((((((((((((....))...))))))))))..))).....--------- ( -21.10, z-score = -1.09, R) >droSim1.chrX 6395614 93 - 17042790 -----------------UGGCCUCCUCAGUCAUAUCGUUUAUGCAAUUGCACUGCGAAUGCAAAUUACCAACUGCAACUGCAAUUCCCUUGAUUGCAGUUUUCCAUGUUC--------- -----------------((((.......))))..((((...(((....)))..)))).((((..........))))(((((((((.....)))))))))...........--------- ( -19.60, z-score = -1.19, R) >consensus _________________UGGCCUCCUCAGUCAUAUCGUUUAUGCAAUUGCACUGCAAAUGCAAAUUACCAACUGCAAUUG______CCUCGAUUGCAGUUUUCCAUGUUC_________ .................((((.......)))).........((((.((((...)))).)))).......(((((((((((.........)))))))))))................... (-18.06 = -17.38 + -0.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:24:57 2011