| Sequence ID | dm3.chrX |
|---|---|
| Location | 7,980,729 – 7,980,789 |
| Length | 60 |
| Max. P | 0.994808 |
| Location | 7,980,729 – 7,980,789 |
|---|---|
| Length | 60 |
| Sequences | 5 |
| Columns | 61 |
| Reading direction | reverse |
| Mean pairwise identity | 65.55 |
| Shannon entropy | 0.61786 |
| G+C content | 0.43215 |
| Mean single sequence MFE | -14.54 |
| Consensus MFE | -9.39 |
| Energy contribution | -10.03 |
| Covariance contribution | 0.64 |
| Combinations/Pair | 1.31 |
| Mean z-score | -1.62 |
| Structure conservation index | 0.65 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.74 |
| SVM RNA-class probability | 0.994808 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 7980729 60 - 22422827 AC-AGGCACGUCCAUCUGUGAUGUAAUCCUUGCAUAUUUACAUACAUUGCGUCCACAUGGA ..-.......(((((.((.((((((((...((........))...)))))))))).))))) ( -14.10, z-score = -0.92, R) >droYak2.chrX 8439887 53 + 21770863 ACAAGGCACGUCCAUCUGUGAUGUAAUGCCC--------AGUUACAUUGCGUCCGAAUGGA ..........(((((.((.(((((((((...--------.....))))))))))).))))) ( -16.10, z-score = -1.79, R) >droSec1.super_44 64813 54 - 251150 -------ACGUCCAUCUGUGAUGUAAUGCUCGCAUAUUUACAUACAUUGCGUCCACAUGGA -------...(((((.((.(((((((((................))))))))))).))))) ( -15.39, z-score = -2.08, R) >droSim1.chrX 6376853 54 - 17042790 -------ACGUCCAUCUGUGAUGUAAUGCUUGCAUAUUUACAUACAUUGCGUCCACAUGGA -------...(((((.((.(((((((((..((........))..))))))))))).))))) ( -18.10, z-score = -3.17, R) >droPer1.super_25 301267 57 + 1448063 -ACAGAGGUGUCUGCCUGC--UGGAACUCUA-CAAAAAUACAUAUAUUGUACAUAUCCCGA -.(((((((....)))).)--))........-......((((.....)))).......... ( -9.00, z-score = -0.17, R) >consensus ___AG__ACGUCCAUCUGUGAUGUAAUGCUCGCAUAUUUACAUACAUUGCGUCCACAUGGA ..........(((((.((.(((((((((................))))))))))).))))) ( -9.39 = -10.03 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:24:56 2011