| Sequence ID | dm3.chrX |
|---|---|
| Location | 7,969,798 – 7,969,908 |
| Length | 110 |
| Max. P | 0.514083 |
| Location | 7,969,798 – 7,969,908 |
|---|---|
| Length | 110 |
| Sequences | 5 |
| Columns | 116 |
| Reading direction | reverse |
| Mean pairwise identity | 60.12 |
| Shannon entropy | 0.70745 |
| G+C content | 0.35745 |
| Mean single sequence MFE | -21.92 |
| Consensus MFE | -7.76 |
| Energy contribution | -7.56 |
| Covariance contribution | -0.20 |
| Combinations/Pair | 1.60 |
| Mean z-score | -1.15 |
| Structure conservation index | 0.35 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.04 |
| SVM RNA-class probability | 0.514083 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 7969798 110 - 22422827 GUGUUAUGUACAUUUGACUAAAUAAGAAAAUCCAACUAAGCAUAUUCGGGGACAAAUGGAAAGGUGACCC-----AGCGCACCUGUUUAGUCCAUGGUUUUAGCUCAA-UGUAUAG ......((((((((.(((((((.........((((((((((.((((.(....).))))...(((((....-----....))))))))))))...))).))))).))))-)))))). ( -26.20, z-score = -1.16, R) >droSim1.chrX 6366995 116 - 17042790 GUAUCAUGUACAUUUGACUAAAUAUGAAAAUCCAACUAAGCAUAUUCUGGGACAAAUGGACAGGUGACCCAAGCGAGCACACCUGUUUUGUACAUGGUUUUAGUUCAAUUGUAUAA ..((((((((((((((.(((((((((..............)))))).)))..)))))(((((((((.............))))))))).))))))))).................. ( -26.36, z-score = -0.89, R) >droSec1.super_44 53908 116 - 251150 GUAUUAUGUACAUUUGACUAAAUAUGAAAAUCGAACUAAGCAUAUUCGGGGACAAAUGGACAGGUGACCCAAGCGAGCACACCUGUUUAGUACAUGGUUUUAGUUCAAUUGUAUAA ......((((((.(((((((((((((.....................(....)...((((((((((.............))))))))))...))))..))))).)))).)))))). ( -27.32, z-score = -1.52, R) >droYak2.chrX 8428403 95 + 21770863 GUAUGCUUUUCAUUUGACUAAAAAAGAAAAUCCAACUAAAUGCUCUCUG-----AAUAGACAG----------------CACCUGUUUAGUCCAUAGUUUUGGUUACAUUUUAUAG ......(((((.(((......))).)))))...(((((((.(((..(((-----(((((....----------------...)))))))).....))))))))))........... ( -13.60, z-score = -0.12, R) >droAna3.scaffold_12943 2935929 101 + 5039921 GUGUUUUCUACCACUGUUCAACAAAACUCAUGUUUCCAGAAACUUACCAAUACUAAAAUUUUGGCUAAUC---------AGCCAAACUAACAAAAGGUCACACUAAACGC------ ((((((...(((.(((...((((.......))))..)))....................(((((((....---------))))))).........)))......))))))------ ( -16.10, z-score = -2.08, R) >consensus GUAUUAUGUACAUUUGACUAAAUAAGAAAAUCCAACUAAGCAUAUUCGGGGACAAAUGGACAGGUGACCC_____AGC_CACCUGUUUAGUACAUGGUUUUAGUUCAAUUGUAUAA ........................................................((((((((((.............))))))))))........................... ( -7.76 = -7.56 + -0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:24:56 2011