| Sequence ID | dm3.chrX |
|---|---|
| Location | 7,956,700 – 7,956,767 |
| Length | 67 |
| Max. P | 0.609605 |
| Location | 7,956,700 – 7,956,767 |
|---|---|
| Length | 67 |
| Sequences | 7 |
| Columns | 74 |
| Reading direction | forward |
| Mean pairwise identity | 77.40 |
| Shannon entropy | 0.43380 |
| G+C content | 0.58155 |
| Mean single sequence MFE | -26.67 |
| Consensus MFE | -13.95 |
| Energy contribution | -14.50 |
| Covariance contribution | 0.55 |
| Combinations/Pair | 1.24 |
| Mean z-score | -1.63 |
| Structure conservation index | 0.52 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.24 |
| SVM RNA-class probability | 0.609605 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 7956700 67 + 22422827 -------GCUGGUUUAACCAGUACGCCCACAUGUGGGCGGCCCAGAUGUGCCUCGUUUUUGGCCCAAUGGCUGU -------(((((.....))))).((((((....))))))(((....((.(((........))).))..)))... ( -27.60, z-score = -1.78, R) >droSim1.chrX 6354138 67 + 17042790 -------GCUGGUUUAACCAGUACGCCCACAUGUGGGCGGCCCAGAUGUGCCUCGUUUUUGGCCCAAUGGCUGU -------(((((.....))))).((((((....))))))(((....((.(((........))).))..)))... ( -27.60, z-score = -1.78, R) >droSec1.super_44 41028 67 + 251150 -------GCUGGUUUAACCAGUACGCCCACAUGUGGGCGGCCCAGAUGUGCCUCGUUUUUGGCCCAAUGGCUGU -------(((((.....))))).((((((....))))))(((....((.(((........))).))..)))... ( -27.60, z-score = -1.78, R) >droYak2.chrX 8415390 67 - 21770863 -------GCUGGUACAACCAGUACGCCCACAUGUGGGCCGCCCAGAUGUGGCUCGUUUUUGGCCCAGUGGGUGU -------(((((.....)))))((((((((...(((((((...(((((.....))))).))))))))))))))) ( -32.80, z-score = -2.55, R) >droEre2.scaffold_4690 16865650 67 + 18748788 -------GCUGGUUUAACCAGUACGCCCACAUGUGGGAGGCCCAGAUGUGGCUCGUUUUUGGCCCAGUGGGUGU -------(((((.....)))))((((((((((.((((...)))).))(.(((.((....)))))).)))))))) ( -29.80, z-score = -2.24, R) >droAna3.scaffold_13117 2169934 60 + 5790199 -------GCUGG--CAACCAGUACGCCCACAUCUGGGCGGCCCAGAUGUUGGUC--UCUCGCACCGAUAGU--- -------(((((--...)))))..(((.(((((((((...))))))))).)))(--(.(((...))).)).--- ( -22.20, z-score = -1.35, R) >droPer1.super_25 274412 72 - 1448063 CUCUGUCAGCGUUGGAACUAGUACGCCCACAUUUAUGUGCCGCAGAUGUUUGUC--UGUUGGUCUGUAGGCGGU ..(((((.((((..........)))).......(((..(((((((((....)))--)).))))..)))))))). ( -19.10, z-score = 0.08, R) >consensus _______GCUGGUUUAACCAGUACGCCCACAUGUGGGCGGCCCAGAUGUGCCUCGUUUUUGGCCCAAUGGCUGU .......(((((.....)))))..((((((((.((((...)))).)))))..........)))........... (-13.95 = -14.50 + 0.55)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:24:53 2011