| Sequence ID | dm3.chrX |
|---|---|
| Location | 7,956,448 – 7,956,560 |
| Length | 112 |
| Max. P | 0.813162 |
| Location | 7,956,448 – 7,956,560 |
|---|---|
| Length | 112 |
| Sequences | 5 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 81.90 |
| Shannon entropy | 0.31526 |
| G+C content | 0.51119 |
| Mean single sequence MFE | -26.56 |
| Consensus MFE | -19.06 |
| Energy contribution | -19.62 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.75 |
| Structure conservation index | 0.72 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.77 |
| SVM RNA-class probability | 0.813162 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 7956448 112 - 22422827 -----CCCCUGACAAACACAAAUUCCUGCUGCUGCCACUGAGCUCUUGAUUUUUGUACGCUCUUUUCGCUUCUGCCUACGUACUCUACUCGAUU--UUUAGUUCGAGUGCAAGAUCUCC -----......................((....))....(((.(((((......(((((........((....))...)))))..(((((((..--......)))))))))))).))). ( -21.10, z-score = -1.46, R) >droSim1.chrX 6353888 116 - 17042790 CCUCCCCACUGACAAAUAGAAAUUCUUGCGGCCGCCACUGAGCUCUUGA-UUUUGUACGCUCUGUUCGCUCCUGCCUACGUACUCCACUCGAUU--UUGAGUUCGAGUGCAAGAUCCCC .......................(((((((((.((.((.((((......-........)))).))..))....)))..........((((((..--......))))))))))))..... ( -25.64, z-score = -1.32, R) >droSec1.super_44 40781 118 - 251150 CCUCCCCCCUGACAAAUAGAAAUUCUUGCGGCCGCCACUGAGCUCUUGA-UUUUGUACGCUCUGUUCGCUCCUGCCUACGUACUCCACUCGAUUUGUGGAGUUCGAGUGCAAGAUCCCC .......................(((((((((.((.((.((((......-........)))).))..))....)))..((.(((((((.......))))))).))...))))))..... ( -31.44, z-score = -2.57, R) >droYak2.chrX 8415145 110 + 21770863 AACCCCCCCUG------ACAAAUUCCUGCGGGCACCACUGAGUUCCUUACUU-UGUACGCUCUUUUUGCUCCUGCCUACGUACUCUACUCGAUU--UUGAGUUCGAGUGCAUGAUCGGU ........(((------(((.......(..((((..((.((((.....))))-.))..((.......))...))))..)((((((.(((((...--.)))))..)))))).)).)))). ( -26.80, z-score = -2.12, R) >droEre2.scaffold_4690 16865395 111 - 18748788 ACACCCCCCUG------AGAAAUCCCUGCGGGCGCCCCUGAGUUCUUCACUUCUGCACGCUCUUUUUGCUCCUGCCUACGUACUCUACUCGAUU--UUGAGUUCGAGUGCAUGAUCGGU ........(((------(.........(((((.((....((((....((....))...)))).....)).)))))....((((((.(((((...--.)))))..))))))....)))). ( -27.80, z-score = -1.30, R) >consensus ACUCCCCCCUGACAAA_AGAAAUUCCUGCGGCCGCCACUGAGCUCUUGA_UUUUGUACGCUCUUUUCGCUCCUGCCUACGUACUCUACUCGAUU__UUGAGUUCGAGUGCAAGAUCCCC ...........................((((..((....((((...............)))).....))..))))....((((((.((((((....))))))..))))))......... (-19.06 = -19.62 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:24:52 2011