| Sequence ID | dm3.chrX |
|---|---|
| Location | 7,914,317 – 7,914,375 |
| Length | 58 |
| Max. P | 0.996454 |
| Location | 7,914,317 – 7,914,375 |
|---|---|
| Length | 58 |
| Sequences | 8 |
| Columns | 62 |
| Reading direction | forward |
| Mean pairwise identity | 62.95 |
| Shannon entropy | 0.74425 |
| G+C content | 0.57093 |
| Mean single sequence MFE | -21.10 |
| Consensus MFE | -9.58 |
| Energy contribution | -10.19 |
| Covariance contribution | 0.61 |
| Combinations/Pair | 1.80 |
| Mean z-score | -1.93 |
| Structure conservation index | 0.45 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.93 |
| SVM RNA-class probability | 0.996454 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 7914317 58 + 22422827 CCAACGAAUAGCGGUGGUGUGAUGGAACCAUUAUACUGUGGCUGUGGUGGACCGAAAC---- (((....(((((.(..((((((((....))))))))..).)))))..)))........---- ( -23.70, z-score = -4.49, R) >droEre2.scaffold_4690 16827723 58 + 18748788 CCCACGAACAGCGGUGGUGUGAUGGCACAGUUGUGCUGCGGUUGUGGAGGACUGAAAC---- .((((((.(((((..(.((((....)))).)..)))))...))))))...........---- ( -18.70, z-score = -0.90, R) >droYak2.chrX 8375464 58 - 21770863 CCCACGAACAGCGGUGGUGUGAUGGCAUUGUUGUGCUGCGGCUGUGGUCGGUUGAAAC---- ((.((..(((((.(..(((..((......))..)))..).))))).)).)).......---- ( -20.40, z-score = -1.24, R) >droSec1.super_50 198807 58 + 201529 CCAACGAACAGCGGUGGUGUGAUGGAACCGUUAUGUUGCGGCUGUGUUGGACCAAAAC---- (((((..(((((.(..(..(((((....)))))..)..).))))))))))........---- ( -25.90, z-score = -4.20, R) >droSim1.chrX_random 2392748 58 + 5698898 CCAACGAACAGCGGUGGUGUGAUGGAACCGUUAUGUUGCGGCUGUGUUGGACCAAAAC---- (((((..(((((.(..(..(((((....)))))..)..).))))))))))........---- ( -25.90, z-score = -4.20, R) >droPer1.super_28 231694 62 - 1111753 CCGAAGAACAGGGGCGGCGACAUCACGGAGCUGUGCUGAACUGGUGCCGUAUCGGGCAGCAG ..........((.(((((..(.....)..))))).))...(((.((((......)))).))) ( -21.30, z-score = -0.64, R) >droVir3.scaffold_12928 3578423 55 - 7717345 CCAAUGAAUACUGGCGGCAUAAUGGCCACGUUGCGCUGCAUCUGGGGCGGCGCAU------- (((........))).(((......)))....((((((((.......)))))))).------- ( -19.40, z-score = -0.37, R) >droMoj3.scaffold_6359 3791252 55 - 4525533 CCAAUGAAGAUCGGCGGUAUUACCGGAUUGUCGCGCAUGAACUGCGGCGGAGCAU------- ((......((((..(((.....)))))))((((((.......)))))))).....------- ( -13.50, z-score = 0.61, R) >consensus CCAACGAACAGCGGUGGUGUGAUGGCACCGUUGUGCUGCGGCUGUGGUGGACCAAAAC____ .......(((((.((((((((((......)))))))))).)))))................. ( -9.58 = -10.19 + 0.61)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:24:50 2011