| Sequence ID | dm3.chrX |
|---|---|
| Location | 7,914,090 – 7,914,201 |
| Length | 111 |
| Max. P | 0.869574 |
| Location | 7,914,090 – 7,914,201 |
|---|---|
| Length | 111 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 73.57 |
| Shannon entropy | 0.45578 |
| G+C content | 0.51623 |
| Mean single sequence MFE | -34.61 |
| Consensus MFE | -20.46 |
| Energy contribution | -22.22 |
| Covariance contribution | 1.76 |
| Combinations/Pair | 1.26 |
| Mean z-score | -1.62 |
| Structure conservation index | 0.59 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.99 |
| SVM RNA-class probability | 0.869574 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 7914090 111 + 22422827 AUCCAUCAUCAAAGGCCUCGUCGUAGUUUUGCACACUGUAUGCCCCCUUUGGUGACUUCGGCUCCU------UCGUUUCCAUUACCAUAAAGCCCUUGGUGAUGGAAAUAUCAAAUU--- .....((((((((((...(((.(((((.......))))))))...))))))))))(....).....------..(((((((((((((.........)))))))))))))........--- ( -30.50, z-score = -3.07, R) >droEre2.scaffold_4690 16827496 114 + 18748788 AUCCUUUAGCACUGCCCUCUUGGUAGCUUUGCAAACUGUAACCACCACUUGGAGGCGUCGGGUGCU------CCGUUUCCAUUACCAAAAAGCCCUUGGUAAUGGGAACGUUGGGCUUCU .(((...(((((((((((((((((.(..((((.....))))).))))...))))).))..))))))------.(((((((((((((((.......)))))))))))))))..)))..... ( -42.10, z-score = -2.84, R) >droYak2.chrX 8375234 114 - 21770863 AUCCCUUCUCGCUGGCCUCCUGGUAGCUCUCCAAGGAGUAAGCACCUCGCGGAGGCGUCUGCUGCU------CCGUUUCCAUUACCAUGAAGCCCUGGGUAACGGGAAUGAAGCCCCCAU ..........((..((((((.(((.((((((....)))..))))))....))))))....)).(((------.(((((((.(((((...........))))).))))))).)))...... ( -38.70, z-score = -0.60, R) >droSec1.super_50 198586 117 + 201529 AUCCAUCAUCAAACGCCUCUUCGUAGCUUUGCACACUGUAAGCACCCUUUGGGGGCUUCGGGUCCUCCGCCGCCGUUUCCAUUACCAUGAAGCCCUUGGUGAUGCUAAUGUCAAUUU--- ...(((((((((..((.((...(((((((.((.....))))))......(((..((..(((........)))..))..))).)))...)).))..))))))))).............--- ( -31.20, z-score = -0.92, R) >droSim1.chrX_random 2392527 117 + 5698898 AUCCAUCAUCAAACGCCUCUUCGUAGCUUUGCACACUGUAAGCACCCUUUGGGGGCUUCGGGUCCUCCGCCGCCGUUUCCAUCACCAUGAAGCCCUUGGUGAUGCUAAUGUCAAUUU--- ...(((((((((...((.....((.((((.((.....)))))))).....))(((((((((((....................))).))))))))))))))))).............--- ( -30.55, z-score = -0.68, R) >consensus AUCCAUCAUCAAAGGCCUCUUCGUAGCUUUGCACACUGUAAGCACCCUUUGGAGGCUUCGGGUCCU______CCGUUUCCAUUACCAUGAAGCCCUUGGUGAUGGGAAUGUCAAUUU___ ..............((((((..(..(((.(((.....))))))..)....)))))).................((((((((((((((.........)))))))))))))).......... (-20.46 = -22.22 + 1.76)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:24:50 2011