| Sequence ID | dm3.chrX |
|---|---|
| Location | 7,901,808 – 7,901,866 |
| Length | 58 |
| Max. P | 0.918756 |
| Location | 7,901,808 – 7,901,866 |
|---|---|
| Length | 58 |
| Sequences | 5 |
| Columns | 62 |
| Reading direction | forward |
| Mean pairwise identity | 80.20 |
| Shannon entropy | 0.34336 |
| G+C content | 0.32429 |
| Mean single sequence MFE | -12.10 |
| Consensus MFE | -10.99 |
| Energy contribution | -10.76 |
| Covariance contribution | -0.23 |
| Combinations/Pair | 1.24 |
| Mean z-score | -1.30 |
| Structure conservation index | 0.91 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.27 |
| SVM RNA-class probability | 0.918756 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 7901808 58 + 22422827 AUUUUAUUUUCCGAGUGAAAUGGUCACUUGAUUGAAUUUCGAUUCAAAUGGAAACUGA---- ...(((.(((((((((((.....))))))..((((((....))))))..))))).)))---- ( -13.10, z-score = -1.56, R) >droSim1.chrX 6316628 58 + 17042790 AUUUUAUUUUCCGAGUGAAAUGGUCACUUGAUUGAAUUUCGAUUCAAAUGGAAACGGA---- .......(((((((((((.....))))))..((((((....))))))..)))))....---- ( -13.00, z-score = -1.04, R) >droSec1.super_50 186501 58 + 201529 AUUUUGUUUUCCGAGUGAAAUGGUCACUUGAUUGAAUUUCGAUUCAAAUGGAAACUGA---- .....(((((((((((((.....))))))).((((((....))))))..))))))...---- ( -14.70, z-score = -2.00, R) >droEre2.scaffold_4690 16815808 62 + 18748788 AUUUAAUUUUCCGAGUGAAAUGGUCACUUGAUUGAAUUUCGAUUUAAAUGGGAACUGAACUG .......(((((((((((.....))))))(((((.....))))).....)))))........ ( -11.00, z-score = -0.96, R) >droAna3.scaffold_13117 2117523 51 + 5790199 UUUCUGAUUUCCAAGUGAACUUCUCACUUGAUUGA-------UUUAAUUGGCAGUCUA---- .....((((.((((((((.....))))((((....-------.)))))))).))))..---- ( -8.70, z-score = -0.93, R) >consensus AUUUUAUUUUCCGAGUGAAAUGGUCACUUGAUUGAAUUUCGAUUCAAAUGGAAACUGA____ .......(((((((((((.....))))))..((((((....))))))..)))))........ (-10.99 = -10.76 + -0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:24:48 2011