| Sequence ID | dm3.chrX |
|---|---|
| Location | 7,900,902 – 7,901,069 |
| Length | 167 |
| Max. P | 0.500000 |
| Location | 7,900,902 – 7,901,069 |
|---|---|
| Length | 167 |
| Sequences | 6 |
| Columns | 167 |
| Reading direction | forward |
| Mean pairwise identity | 84.95 |
| Shannon entropy | 0.29000 |
| G+C content | 0.40578 |
| Mean single sequence MFE | -45.01 |
| Consensus MFE | -32.22 |
| Energy contribution | -33.48 |
| Covariance contribution | 1.26 |
| Combinations/Pair | 1.31 |
| Mean z-score | -1.47 |
| Structure conservation index | 0.72 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.01 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>dm3.chrX 7900902 167 + 22422827 UGUGCAUCCUUGUGUUGGCAAUUUAAAUUGGGCAAAUCAUUUGAUGCCACUUAAUCCAUAUGUGUGCGUACGUAAGGAUGUCGAUGGUAUUCUUAAGAGACCACGAUUGGCUGACUUCGAUGGUGGUUGUAAGAACUUUAAUACGAUUUAAGAUGACCAAAGGAAUG ......(((((....(((((.(((((((((..............((((((...((((.((((((....)))))).))))...).)))))((((((...((((((.(((((......))))).)))))).))))))........))))))))).)).))))))))... ( -47.80, z-score = -2.21, R) >droAna3.scaffold_13117 2117185 153 + 5790199 UGUAGACACUUAUGUCAGCAAUUUAAAUUGGGCAAAUCAUUUGAUGCAGCUUAAUCCAAGUGGGUGUGGGCG------UGCUGAGCGGAGU----GGGUGCUGUG--CGAAGGACUCUGUUGCUGGCGACGGAGACUUUAAUGCGAUUUAAGAUGACCAAAAAGG-- .(((..(((((...((((((...........(((..((....))))).(((((((((....)))).))))).------))))))...))))----)..)))..((--(.((((.((((((((....)))))))).))))...)))....................-- ( -44.60, z-score = -0.65, R) >droEre2.scaffold_4690 16814906 167 + 18748788 UGUAGAUCCUUAUGUCAGCAAUUUAAAUUGGGCAAAUCAUUUGAUGCAACUUAAUCCAUAUGUGUGCGUACGUAAGGAUGUCGAUGGUAUUCUUAAGGGACUACGAUUGGCUGACUUCGAUGUGGGUUGUAAGAACUUUAAUACGAUUUAAGAUGACCAAAGGGAUG .....((((((..((((....(((((((((..(((.....))).(((((((((((((.((((((....)))))).))))((((((.(((.(((....))).))).))))))...........)))))))))............))))))))).))))...)))))). ( -43.20, z-score = -1.39, R) >droYak2.chrX 8360301 167 - 21770863 UGUAGAUCCUUAUGGCAGCGAUUUAAAUUGGGCAAAUCAUUUGAUGCAACUUAAUCCAUAUGUGUGCGUACCCAAGGAUGUCGAUGGUAUUCUUAAGAGACCACGAUUGGCUGACUUCGAUGGUGGUUGUGAGAGCUUUAAUGCGAUUUAAGAUGACCAAAGGGAUG .....((((((.(((((.((((.....((((((((.....)))(((((((...........)).))))).)))))....)))).......(((((...((((((.(((((......))))).)))))).)))))((......)).........)).))).)))))). ( -44.10, z-score = -0.64, R) >droSec1.super_50 185599 167 + 201529 UGUAGAUCCUUAUGUCGGCAAUUUAAAUUGGGCAAAUCAUUUGAUGCAACUUAAUCCAUAUGUGUGCGUACGUAAGGAUGUCGAUGGUAUUCUUAAGAGACCACGAUUGGCUGACUUCAAUGGUGGUUGUGAGAACUUUAAUACGAUUUAAGAUGACCAAAGGAAUG ......(((((..((((....((((((((((((..(((....)))........((((.((((((....)))))).)))))))..(((..((((((...((((((.(((((......))))).)))))).))))))..)))...))))))))).))))..)))))... ( -44.90, z-score = -1.83, R) >droSim1.chrX 6315749 167 + 17042790 UGUAGAUCCUUAUGUAGGCAAUUUAAAUUGGGCAAAUCAUUUGAUGCAACUUAAUCCAUAUGUGUGCGUACGUAAGGAUGUCGAUGGUAUUCUUAAGAGACCACGAUUGGCUGACUUCGAUGGUGGUUGUGAGAACUUUAAUACGAUUUAAGAUGACCAAAGGAAUG .....(((((((((((.(((......((((((...(((....)))....)))))).........))).))))))))))).((..((((.((((((...((((((.(((((......))))).)))))).)))))).(((((......)))))...))))..)).... ( -45.46, z-score = -2.12, R) >consensus UGUAGAUCCUUAUGUCAGCAAUUUAAAUUGGGCAAAUCAUUUGAUGCAACUUAAUCCAUAUGUGUGCGUACGUAAGGAUGUCGAUGGUAUUCUUAAGAGACCACGAUUGGCUGACUUCGAUGGUGGUUGUGAGAACUUUAAUACGAUUUAAGAUGACCAAAGGAAUG ......(((((..((((....((((((((((((..(((....)))........((((.((((((....)))))).))))))).......((((((...((((((.(((((......))))).)))))).))))))........))))))))).))))..)))))... (-32.22 = -33.48 + 1.26)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:24:47 2011