| Sequence ID | dm3.chrX |
|---|---|
| Location | 7,891,688 – 7,891,800 |
| Length | 112 |
| Max. P | 0.791950 |
| Location | 7,891,688 – 7,891,800 |
|---|---|
| Length | 112 |
| Sequences | 5 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 78.04 |
| Shannon entropy | 0.39835 |
| G+C content | 0.34505 |
| Mean single sequence MFE | -28.22 |
| Consensus MFE | -13.27 |
| Energy contribution | -16.07 |
| Covariance contribution | 2.80 |
| Combinations/Pair | 1.14 |
| Mean z-score | -2.25 |
| Structure conservation index | 0.47 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.70 |
| SVM RNA-class probability | 0.791950 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 7891688 112 + 22422827 UUGCAAAACAUGAAUUU-GUUUGUAGUAU-UGUAUUUUAAUUUAAAUUGAGCAAAUUAAAUUGUCCGUGGCAAUUUCAGGCAGCUCGCCUUGUUGUUUGAAAUAUGCAGGAAAC (((((((.((......)-))))))))...-.......((((((((.((....)).))))))))(((...(((((((((((((((.......)))))))))))).))).)))... ( -27.00, z-score = -1.67, R) >droSim1.chrX 6307034 113 + 17042790 UUGCAAAACAUAAAUUU-GUUUGCUGUAUAUGUAGUUUAAUUUGAAUCAAGCAAAUUAAAUUGUCUGUGGCAAUUUCAGGCAGCUCGCCUUGUUGUCUGAAAUAUGCAGGAAAC ..(((((.((......)-))))))..((((..((((((((((((.......))))))))))))..))))(((((((((((((((.......)))))))))))).)))....... ( -34.10, z-score = -3.71, R) >droSec1.super_50 176612 107 + 201529 UUGCAAAACAUAAAUUU-GUUUGCUGUA------GUUUAAUUUGAAUCAAGCAAAUUAAAUUGUCUGUGGCAAUUUCAGGCAGCUAGCCUUGUUGUCUGAAAUAUGCAGGAAAC ..(((((.((......)-))))))..((------((((((((((.......))))))))))))(((...(((((((((((((((.......)))))))))))).))).)))... ( -33.60, z-score = -3.78, R) >droYak2.chrX 8351531 94 - 21770863 UUGCGACACAUAAAUUUUGUAUGUCGCAU--GGAUUUCAAUUAAAAUCCAGCCAAUUAAAUUG----------UCUC--------UGCCUUGCUGUCUGAAAUAUGCAGCAAAC .(((((((.(((.....))).)))))))(--((((((......))))))).............----------....--------....(((((((.........))))))).. ( -23.50, z-score = -2.78, R) >droEre2.scaffold_4690 16806224 111 + 18748788 UUGCAAGACAUAAAUUU-GUAUGUGGUAU--GCAGUUUCAUUUAAAUCAAGCAAAAUAAAUUGGGCUUGGCAACUUCAAUCAGCUUGCCUUGCAGCCUGAAAUAUGCAGGAAAC (((((..(((((.....-.)))))(((.(--((((.............((((..((....))..))))(((((((......)).))))))))))))).......)))))..... ( -22.90, z-score = 0.69, R) >consensus UUGCAAAACAUAAAUUU_GUUUGUUGUAU__GUAGUUUAAUUUAAAUCAAGCAAAUUAAAUUGUCCGUGGCAAUUUCAGGCAGCUCGCCUUGUUGUCUGAAAUAUGCAGGAAAC (((((.......(((((.((((((..........................)))))).)))))..........((((((((((((.......)))))))))))).)))))..... (-13.27 = -16.07 + 2.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:24:46 2011