| Sequence ID | dm3.chrX |
|---|---|
| Location | 7,885,996 – 7,886,053 |
| Length | 57 |
| Max. P | 0.964592 |
| Location | 7,885,996 – 7,886,053 |
|---|---|
| Length | 57 |
| Sequences | 3 |
| Columns | 58 |
| Reading direction | reverse |
| Mean pairwise identity | 94.22 |
| Shannon entropy | 0.07916 |
| G+C content | 0.48840 |
| Mean single sequence MFE | -15.73 |
| Consensus MFE | -15.47 |
| Energy contribution | -15.03 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.91 |
| Structure conservation index | 0.98 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.74 |
| SVM RNA-class probability | 0.964592 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 7885996 57 - 22422827 ACAGAAUUCACGGGAUUCACUGGAUUCA-UUGGAUUCACUCGAAGGCGAGAGGGUCAG ...(((((((.(.......)))))))).-...(((((.((((....)))).))))).. ( -15.70, z-score = -2.03, R) >droYak2.chrX 8345033 58 + 21770863 ACAGGAUUCAUGGAAUUCACCGGAUUCAUUUGGAUUCACUCGAAGGCGAGAGGGUCAG ...(((((((..(((((.....)))))...))))))).((((....))))........ ( -15.50, z-score = -1.52, R) >droEre2.scaffold_4690 16800490 57 - 18748788 ACAGGAUUCACGGAAUUCACUGGAUUCA-UUGGAUUCACUCGAAGGCGAGAGGGUCAG ....(((((...(((((((.((....))-.))))))).((((....)))).))))).. ( -16.00, z-score = -2.17, R) >consensus ACAGGAUUCACGGAAUUCACUGGAUUCA_UUGGAUUCACUCGAAGGCGAGAGGGUCAG ...(((((((..(((((.....)))))...))))))).((((....))))........ (-15.47 = -15.03 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:24:45 2011