| Sequence ID | dm3.chrX |
|---|---|
| Location | 7,883,068 – 7,883,158 |
| Length | 90 |
| Max. P | 0.798921 |
| Location | 7,883,068 – 7,883,158 |
|---|---|
| Length | 90 |
| Sequences | 4 |
| Columns | 103 |
| Reading direction | reverse |
| Mean pairwise identity | 58.74 |
| Shannon entropy | 0.64680 |
| G+C content | 0.38715 |
| Mean single sequence MFE | -21.45 |
| Consensus MFE | -7.22 |
| Energy contribution | -7.22 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.62 |
| Mean z-score | -1.77 |
| Structure conservation index | 0.34 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.72 |
| SVM RNA-class probability | 0.798921 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 7883068 90 - 22422827 UAUGCACUAUGGGGCCAACUAACACUAUAGUUGGCCAAAAAGGAUAAUUUAAAGUCAUCGAGAUGAAAUGAGAUG---------UGCUAGGAAAAUAAU---- ...((((.....(((((((((......)))))))))..........((((....((((....))))....)))))---------)))............---- ( -23.90, z-score = -3.72, R) >droSim1.chrX_random 2386513 99 - 5698898 UAUGCACUAUGGGGUCAACGGGCACUUAUAUUGGCCAAAAAAAAUUAUUUCUUUGCAUCGAGAUGAAAUAAGAUGAUACAUAUGUGCUAGAAAAAUAAU---- ...((((((((..((((.(.(((.(.......))))........(((((((........))))))).....).)))).)))).))))............---- ( -20.70, z-score = -1.98, R) >droSec1.super_50 168445 95 - 201529 UAUGCACUAUGGGGCCAAGGAGCACUUAUGUUGGCCAAAAAGAAUAAUUUAAAGUCAUCGAGAUGAAAUGAGAUG----AGAUGUGCUAGAAAAAUAAU---- ...((((.....((((((.(........).))))))..................(((((............))))----)...))))............---- ( -18.80, z-score = -1.54, R) >droAna3.scaffold_13340 6018173 84 + 23697760 -------UCGGUAGUCGGUGGCCGCCUGUGCGGAAGUAAACGAUU--UUCGGCAAAACAGAGUUGAAAGACGGCG----------CCCAAAAACAAAGUUGCA -------......((...(((.((((..(((....)))...(.((--((((((........)))))))).)))))----------.)))...))......... ( -22.40, z-score = 0.15, R) >consensus UAUGCACUAUGGGGCCAACGAGCACUUAUGUUGGCCAAAAAGAAUAAUUUAAAGUCAUCGAGAUGAAAUAAGAUG_________UGCUAGAAAAAUAAU____ ............((((((((........))))))))................................................................... ( -7.22 = -7.22 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:24:44 2011