| Sequence ID | dm3.chrX |
|---|---|
| Location | 7,875,484 – 7,875,592 |
| Length | 108 |
| Max. P | 0.829479 |
| Location | 7,875,484 – 7,875,592 |
|---|---|
| Length | 108 |
| Sequences | 5 |
| Columns | 119 |
| Reading direction | forward |
| Mean pairwise identity | 80.67 |
| Shannon entropy | 0.32819 |
| G+C content | 0.40288 |
| Mean single sequence MFE | -30.87 |
| Consensus MFE | -17.66 |
| Energy contribution | -18.06 |
| Covariance contribution | 0.40 |
| Combinations/Pair | 1.13 |
| Mean z-score | -2.26 |
| Structure conservation index | 0.57 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.83 |
| SVM RNA-class probability | 0.829479 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 7875484 108 + 22422827 ----UGUUGAUUAAUUUCAACCGGCAAAUUGAUUGCUAUUGAUUAGUUCUAGGCAGUUC--AAGCUCG-----GCGCUUGUUAAUCCAAUUAUGCAAACAAAGUGGGAAAUACACUAUG ----.(((((......)))))..((((((((((((((...((.....))..)))))).(--((((...-----..)))))......))))).)))...((.((((.......)))).)) ( -24.20, z-score = -0.89, R) >droEre2.scaffold_4690 16788249 109 + 18748788 ----GGUUGAUACAUUUGAGCCGGCAAAUUGAUUGGCGAGAAUUAGUU--GGCCAGCAU--AAGCUGGUUAACGCGCUCGUUAAUCCAAUUAUGCAAACAAAGUUGUAAAUACCCUG-- ----(((...((((.........(((((((((((((((((.....(((--(((((((..--..))))))))))...))))))))).))))).))).........))))...)))...-- ( -39.07, z-score = -4.39, R) >droYak2.chrX 8334473 109 - 21770863 GGUUGCUUGAUUAAUUUCCAGCCGCAAAUUGAUUGCCGUGGAUUAGUU--GGCCAGCUUG-AAGCUUG-----GCGCUUGUUAAUCCAAUUAUGCAAACAAAGUUGGAUUUACACUG-- ....((..((((((..((((.(.((((.....)))).)))))))))))--.((((((...-..)).))-----)))).(((.(((((((((.((....)).))))))))).)))...-- ( -30.10, z-score = -1.03, R) >droSec1.super_50 160990 110 + 201529 ----GGUUGAUUAAUUUCAACCGGCAAAUUGAUUGCAUUUGAUUAGUUCCAGGCAGCUCUCAAGCUCG-----GCGCUAGUUAAUCCAAUUAUGCAAACAAAGUUGGAAAUACACAGUG ----((((((......)))))).((((.....))))..(((((((((.((..((.........))..)-----).)))))))))(((((((.((....)).)))))))........... ( -31.50, z-score = -2.86, R) >droSim1.chrX_random 2378542 110 + 5698898 ----GGUUGAUUAAUUUCAACCGGCAAAUUGAUUGCAUUUGAUUAGUUCGAGGCAGCUCUCAAGCUCG-----GCGCUAGUUAAUCCAAUUAUGCAAACAAAGUUGGAAAUACACAGUG ----((((((......)))))).((((.....))))..((((((((((((((............))))-----).)))))))))(((((((.((....)).)))))))........... ( -29.50, z-score = -2.13, R) >consensus ____GGUUGAUUAAUUUCAACCGGCAAAUUGAUUGCAGUUGAUUAGUUC_AGGCAGCUC__AAGCUCG_____GCGCUAGUUAAUCCAAUUAUGCAAACAAAGUUGGAAAUACACUGUG ....((((((......))))))(((.((((((((......))))))))......(((......))).........))).((...(((((((.((....)).)))))))...))...... (-17.66 = -18.06 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:24:42 2011