| Sequence ID | dm3.chrX |
|---|---|
| Location | 7,862,120 – 7,862,213 |
| Length | 93 |
| Max. P | 0.974852 |
| Location | 7,862,120 – 7,862,213 |
|---|---|
| Length | 93 |
| Sequences | 4 |
| Columns | 98 |
| Reading direction | forward |
| Mean pairwise identity | 64.43 |
| Shannon entropy | 0.58093 |
| G+C content | 0.52246 |
| Mean single sequence MFE | -27.71 |
| Consensus MFE | -17.44 |
| Energy contribution | -19.94 |
| Covariance contribution | 2.50 |
| Combinations/Pair | 1.39 |
| Mean z-score | -1.36 |
| Structure conservation index | 0.63 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.92 |
| SVM RNA-class probability | 0.974852 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 7862120 93 + 22422827 CUCUCUGUUUUAUUCUAUCUCUCUCUCUGUCUU---G--AAGGCGGAGGCGGGGGGUGGUUUGCCGUUGGAUGGGGGGGCGUGGCAACGUGUAACGAA ((((((((((((..(((((((((((((((((..---.--..)))))))).)))))))))..)).....))))))))))(((((....)))))...... ( -34.50, z-score = -2.33, R) >droSec1.super_50 148599 96 + 201529 CUCUCUGUUUUAUUCUAUCCCUCUCUCUGUCUUAUUG--UAGGCGGAGGCGGGGGGUGGUUUGCCGUUUGGAUGGGGGGCGAGGCAACGUGUAACGAA .....((((((...((((((((((((((((((.....--.))))))))).)))))))))...(((.(((....))).))))))))).((.....)).. ( -35.30, z-score = -1.88, R) >droSim1.chrX 6297176 96 + 17042790 CUCUCUGUUUUAUUCUAUCCCUCUCUCUGUCUUAUUG--UAGGCGGAGGCGGGGGGUGGUUUGCCGUUUGGAUGGGGGGCGAGGCAACGUGUAACGAA .....((((((...((((((((((((((((((.....--.))))))))).)))))))))...(((.(((....))).))))))))).((.....)).. ( -35.30, z-score = -1.88, R) >droWil1.scaffold_180777 2643897 76 - 4753960 UUCUCUGUCUUAUUUGGUCGCUCUCUCACUCUCGCCGCAUAAACUUUACCUAAGCAGUGUCACUAGUUCCAACACA---------------------- .............((((..(((....((((((....................)).)))).....))).))))....---------------------- ( -5.75, z-score = 0.66, R) >consensus CUCUCUGUUUUAUUCUAUCCCUCUCUCUGUCUUAUUG__UAGGCGGAGGCGGGGGGUGGUUUGCCGUUUGAAUGGGGGGCGAGGCAACGUGUAACGAA ((((((((((....((((((((((((((((((........))))))))).)))))))))..........))))))))))................... (-17.44 = -19.94 + 2.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:24:41 2011