| Sequence ID | dm3.chrX |
|---|---|
| Location | 7,860,303 – 7,860,354 |
| Length | 51 |
| Max. P | 0.809593 |
| Location | 7,860,303 – 7,860,354 |
|---|---|
| Length | 51 |
| Sequences | 10 |
| Columns | 51 |
| Reading direction | forward |
| Mean pairwise identity | 93.86 |
| Shannon entropy | 0.13565 |
| G+C content | 0.33529 |
| Mean single sequence MFE | -11.66 |
| Consensus MFE | -10.32 |
| Energy contribution | -10.43 |
| Covariance contribution | 0.11 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.68 |
| Structure conservation index | 0.89 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.76 |
| SVM RNA-class probability | 0.809593 |
| Prediction | RNA |
| WARNING | Out of training range. z-scores are NOT reliable. |
Download alignment: ClustalW | MAF
>dm3.chrX 7860303 51 + 22422827 UAAAUUGAUUUGGCCCCAAGGGGUUAAUUGAAUUAUUGAAAACUGAUUUCG ..((((.(.(((((((....))))))).).))))...((((.....)))). ( -12.00, z-score = -2.00, R) >droSim1.chrX 6295322 51 + 17042790 UAAAUUGAUUUGGCCCCAAGGGGUUAAUUGAAUUAUUGAAAACUGAUUUCG ..((((.(.(((((((....))))))).).))))...((((.....)))). ( -12.00, z-score = -2.00, R) >droSec1.super_50 146747 51 + 201529 UAAAUUGAUUUGGCCCCAAGGGGUUAAUUGAAUUAUUGAAAACUGAUUUCG ..((((.(.(((((((....))))))).).))))...((((.....)))). ( -12.00, z-score = -2.00, R) >droYak2.chrX 8318655 51 - 21770863 UAAAUUGAUUUGGCCCCAAGGGGUUAAUUGAAUUAUUGAAAACUGAUUUCG ..((((.(.(((((((....))))))).).))))...((((.....)))). ( -12.00, z-score = -2.00, R) >droEre2.scaffold_4690 16773031 51 + 18748788 UAAAUUGAUUUGGCCCCAAGGGGUUAAUUGAAUUAUUGAAAACUGAUUUCG ..((((.(.(((((((....))))))).).))))...((((.....)))). ( -12.00, z-score = -2.00, R) >droAna3.scaffold_13117 2081600 51 + 5790199 UAAAUUGAUUUAGCCCCAAGGGGUUAAUUGAAUUAUUGAAAACUGAUUUGG .........(((((((....)))))))(..(((((.(....).)))))..) ( -12.10, z-score = -2.33, R) >dp4.chrXL_group1a 6718345 51 - 9151740 UAAAUUGAUUCGGCCCCAAGGGGUUAAUUAAAUUAUUGAAAACUGAUUUGG ....((((((.(((((....))))))))))).................... ( -9.90, z-score = -0.90, R) >droPer1.super_28 243955 51 - 1111753 UAAAUUGAUUCGGCCCCAAGGGGUUAAUUAAAUUAUUGAAAACUGAUUUGG ....((((((.(((((....))))))))))).................... ( -9.90, z-score = -0.90, R) >droWil1.scaffold_180777 1645398 51 + 4753960 UAAAUUUAUUUGGCCCCAAGGGGUUAAUUGAAUUAUGGCAAAAUGAUUUAG ..((((((.(((((((....))))))).))))))................. ( -13.30, z-score = -2.20, R) >droVir3.scaffold_12928 3592282 51 - 7717345 UCAAUUGAUUUGGCCCCAAGGGGUUAAUUGAAUUAUGGCCAACUGAUUUUG ..((((.(.(((((((....))))))).).))))................. ( -11.40, z-score = -0.43, R) >consensus UAAAUUGAUUUGGCCCCAAGGGGUUAAUUGAAUUAUUGAAAACUGAUUUCG ..((((.(.(((((((....))))))).).))))................. (-10.32 = -10.43 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:24:41 2011