| Sequence ID | dm3.chrX |
|---|---|
| Location | 7,828,592 – 7,828,727 |
| Length | 135 |
| Max. P | 0.995533 |
| Location | 7,828,592 – 7,828,727 |
|---|---|
| Length | 135 |
| Sequences | 8 |
| Columns | 135 |
| Reading direction | forward |
| Mean pairwise identity | 70.11 |
| Shannon entropy | 0.59881 |
| G+C content | 0.34575 |
| Mean single sequence MFE | -33.65 |
| Consensus MFE | -14.99 |
| Energy contribution | -13.20 |
| Covariance contribution | -1.79 |
| Combinations/Pair | 1.56 |
| Mean z-score | -2.49 |
| Structure conservation index | 0.45 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.81 |
| SVM RNA-class probability | 0.995533 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 7828592 135 + 22422827 UGGAAAGCAGUAGUCUAUGUUUGCGGUCGAAAUACAAUACUGCAUUUGUGUAUGCGAUAAGAAAGCUUUUCUGUUCGUGUGCAUAGGUGCACUGUAAUAAACCAGGAAAAUACGAUGUAAAUGACUACAAGACAU .........((((((...(((((((.(((...........(((((((((((((((((..((((.....))))..)))))))))))))))))(((........))).......))))))))))))))))....... ( -41.60, z-score = -3.54, R) >droSim1.chrX_random 2348323 135 + 5698898 UGGAGAGCAGGAGUCUCUGUUUGCGGUCGAAAUACAAUACUGCAUUUGUGUAUGCGAUACGAAAGAUUUUCUGUUUGUGUGCAUAGGUGCACUGUAAUAAACCAGGAAAAUACGAUGUAAAUGACUACAAGACAU .(((((.......))))).((((..((((...((((....(((((((((((((((((...(((.....)))...)))))))))))))))))(((........)))..........))))..))))..)))).... ( -35.20, z-score = -1.40, R) >droSec1.super_50 115498 135 + 201529 UGGAGAGCAGGAGUCUCUGUUUGCGGUCGAAAUACAAUACUGCAUUUGUGUAUGCGAUAAGAAAGAUUUUCUGUUUGUGUGCAUAGGUGCACUGUAAUAAACCAGGAAAAUACGAUGUAAAUGACUACAAAACAU .(((((.......))))).((((..((((...((((....(((((((((((((((((..((((.....))))..)))))))))))))))))(((........)))..........))))..))))..)))).... ( -37.20, z-score = -2.47, R) >droEre2.scaffold_4690 16740799 135 + 18748788 UGGAGAGCAGGAGUCCCUGUUUGUGGUCGAAAUACAAUACUGCAUUUGUGUAUGCGAUAAGAAAGCUAUUCUGUUUGUGUGCAUAGGUGCACUGUAAUAAACCAGGAAAAUACGAUGUAAAUGACUACAAAACAU ....(((((((....)))))))(((((((...((((....(((((((((((((((((..((((.....))))..)))))))))))))))))(((........)))..........))))..)))))))....... ( -42.80, z-score = -4.03, R) >droYak2.chrX 8286700 135 - 21770863 UGGAGAGCAGGAGUCCCUGUUUGUGGUCAAAAUACAAUACUGCAUUUGUGUAUGCGAUAAGAAAGCUAUUCUGUUUGUGUGCAUAGGUGCACUGUAAUAAACCAGGAAAAUACGAUGUAAAUGACUACAAGACAU ....(((((((....)))))))(((((((...((((....(((((((((((((((((..((((.....))))..)))))))))))))))))(((........)))..........))))..)))))))....... ( -43.50, z-score = -4.02, R) >droAna3.scaffold_13117 2049230 119 + 5790199 CUCGAACUACUGGACUCUGUUAACAAUUCAAA----AUAUUGCAUUUGUGUAUAUGACCAUAAACAUGUUUGGCUUUUGUGCAUAAAUGAACUGUAAUAAACCAGGAAAAGAUAAUGUAAUUG------------ .........((((..........((((.....----..))))((((((((((((.(((((..........))).)).))))))))))))............))))..................------------ ( -20.90, z-score = -0.80, R) >dp4.chrXL_group1a 6684811 123 - 9151740 UUUGAAGUGUUUUUCAUUAUUGAAACCACAAA---AAUAUCGCGUUUAUGUAUGUAA----AAAUAUAUU----UUCCAUGCAUAUAUACGUUGUAAUAAAGCUGAAGAACCUUAUGUAAGCGGUAAAUUCAAU- .((((((((..(((((....))))).)))...---..((((((((.((((((((.((----((.....))----)).))))))))...))(((.......))).................))))))..))))).- ( -24.60, z-score = -2.12, R) >droPer1.super_28 210510 123 - 1111753 UUUGAAGUGUUUUUCAUUAUUGAAACUACAAA---AAUAUCGCGUUUAUGUAUGUAA----AAAUAGAUU----UUCCAUGCAUAUAUACGUUGUAAUAAAGCUGAAGAACCUUAUGUAAGCGGUAAAUUCAAU- .(((((.(((.(((((....)))))..)))..---..((((((((.((((((((.((----((.....))----)).))))))))...))(((.......))).................))))))..))))).- ( -23.40, z-score = -1.54, R) >consensus UGGAAAGCAGGAGUCUCUGUUUGCGGUCGAAAUACAAUACUGCAUUUGUGUAUGCGAUAAGAAAGAUAUUCUGUUUGUGUGCAUAGGUGCACUGUAAUAAACCAGGAAAAUACGAUGUAAAUGACUACAAGACAU ..(..((((........))))..)............(((.((((((((((((((.((...(((.....)))...)).)))))))))))))).)))........................................ (-14.99 = -13.20 + -1.79)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:24:40 2011