| Sequence ID | dm3.chrX |
|---|---|
| Location | 7,824,729 – 7,824,795 |
| Length | 66 |
| Max. P | 0.644664 |
| Location | 7,824,729 – 7,824,795 |
|---|---|
| Length | 66 |
| Sequences | 3 |
| Columns | 66 |
| Reading direction | reverse |
| Mean pairwise identity | 85.86 |
| Shannon entropy | 0.19479 |
| G+C content | 0.41066 |
| Mean single sequence MFE | -15.43 |
| Consensus MFE | -12.35 |
| Energy contribution | -12.47 |
| Covariance contribution | 0.12 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.69 |
| Structure conservation index | 0.80 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.32 |
| SVM RNA-class probability | 0.644664 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 7824729 66 - 22422827 GUGUGUGUGUGGCGUGAAAACGCGGUGCACUUUUUAAAAGUGUUUUUCUAACUAAAUGAGAGCAUG ....(((..(.((((....)))).)..))).........((((((((..........)))))))). ( -19.10, z-score = -2.43, R) >droSim1.chrX 6274565 58 - 17042790 --------GUGGCGUGAAAACGCGGUGCACCUUUUAAAAGUGUUUUUCUAUCUAAAUGAGAAUGCG --------...((((....))))((....))........((((((((..........)))))))). ( -11.20, z-score = -0.42, R) >droSec1.super_50 111707 66 - 201529 GUGUGUGUGUGGCGUGAAAACGCGGUGCACCUUUUAAAAGUGUUUUUCUAUCUAAAUGAGAAUGUG ....(((..(.((((....)))).)..))).............(((((.........))))).... ( -16.00, z-score = -2.23, R) >consensus GUGUGUGUGUGGCGUGAAAACGCGGUGCACCUUUUAAAAGUGUUUUUCUAUCUAAAUGAGAAUGUG ....(((..(.((((....)))).)..))).........((((((((..........)))))))). (-12.35 = -12.47 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:24:39 2011