| Sequence ID | dm3.chrX |
|---|---|
| Location | 7,803,998 – 7,804,105 |
| Length | 107 |
| Max. P | 0.882190 |
| Location | 7,803,998 – 7,804,105 |
|---|---|
| Length | 107 |
| Sequences | 3 |
| Columns | 109 |
| Reading direction | reverse |
| Mean pairwise identity | 56.00 |
| Shannon entropy | 0.61570 |
| G+C content | 0.42662 |
| Mean single sequence MFE | -23.64 |
| Consensus MFE | -13.95 |
| Energy contribution | -11.52 |
| Covariance contribution | -2.43 |
| Combinations/Pair | 1.60 |
| Mean z-score | -0.86 |
| Structure conservation index | 0.59 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.05 |
| SVM RNA-class probability | 0.882190 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 7803998 107 - 22422827 UAAUUGCUCAUUAUUACUAUCGUUUUUUGUUUGUUUGUUUGCUUGACCCGUUUCCCAUUUUAC-UAUAAUCAUCGGUCGAGCUUGGACGGACUUU-GCUUGCGCUGGUC ...............((((.(((.....((((((..(...((((((((...............-..........)))))))).)..))))))...-....))).)))). ( -22.61, z-score = -1.41, R) >droYak2.chrX 8261409 108 + 21770863 UAAUUGCUCAUUACUACGUUUCAAUACUAUUUUUUUGUUUGUUUGACCCGUUUCCCGUUUUGC-CAUAGUCAUUAGUCGAACUUGGACGGACUUUGGCUGGUGCUGGAC ...............(((..((((.((.............))))))..))).(((.((...((-((.((((....(((.......))).)))).))))....)).))). ( -22.92, z-score = -0.74, R) >anoGam1.chr2R 59245434 102 - 62725911 UACUUUCGUAUCCACACUAACGU------CUUGUGCGUGCAAAUGAUAGGAUGAUCGAUCUACGCUCACACGACGAUCGUGUUCGUGCGCACUUG-ACUUUUACCAGUC .....................((------(..(((((..(........((((.....))))......(((((.....)))))..)..)))))..)-))........... ( -25.40, z-score = -0.43, R) >consensus UAAUUGCUCAUUAAUACUAUCGU_U__U_UUUGUUUGUUUGAUUGACCCGUUUCCCGUUUUAC_CAUAAUCAUCGGUCGAGCUUGGACGGACUUU_GCUUGUGCUGGUC ................................(((((((((((((((............................)))))))..))))))))................. (-13.95 = -11.52 + -2.43)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:24:35 2011