| Sequence ID | dm3.chrX |
|---|---|
| Location | 7,793,628 – 7,793,745 |
| Length | 117 |
| Max. P | 0.883272 |
| Location | 7,793,628 – 7,793,745 |
|---|---|
| Length | 117 |
| Sequences | 6 |
| Columns | 125 |
| Reading direction | forward |
| Mean pairwise identity | 80.26 |
| Shannon entropy | 0.36699 |
| G+C content | 0.34501 |
| Mean single sequence MFE | -22.53 |
| Consensus MFE | -12.38 |
| Energy contribution | -13.05 |
| Covariance contribution | 0.67 |
| Combinations/Pair | 1.30 |
| Mean z-score | -2.26 |
| Structure conservation index | 0.55 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.06 |
| SVM RNA-class probability | 0.883272 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 7793628 117 + 22422827 AAUAUAAUUGAACACAACACACCACAU-UCUAUACCAUUUAU---CGCGUUUAUUUAACAUAAAUGGUUACAAAGUUUUAUUUCUCCUCUCGUGGAUCAUU---UGGUUGUGAUCAACGUUCAG- .......((((.((((((.((......-.....(((((((((---...(((.....))))))))))))................(((......))).....---)))))))).)))).......- ( -21.10, z-score = -1.96, R) >droSim1.chrX 6218692 117 + 17042790 ACUAUAAUUGAACACAACACACCACAU-CGUAUACCAUUUUU---CGCGUUUAUUUAACAUAAAUGGUUACAAAGUUUAUUUUCUCCUCUCGUGGAUCACU---UGGUUGCGAUCAACGUUCAG- ........(((((........((((..-.(((.(((((((..---...(((.....)))..))))))))))..((........))......))))......---..((((....))))))))).- ( -19.50, z-score = -1.36, R) >droSec1.super_50 80415 117 + 201529 ACUAUAAUUGAACACAACACACCACAU-CGUAUACCAUUUUU---CGCGUUUAUUUAACAUAAAUGGUUACAAAAUUUAUUUUCUCCUCUCGUGGAUCACU---UGGUUGUGAUCAACGUUCAG- ........(((((..............-.(((.(((((((..---...(((.....)))..))))))))))....................((.((((((.---.....)))))).))))))).- ( -23.10, z-score = -2.70, R) >droYak2.chrX 8250902 120 - 21770863 ACUACAAUUCAACAGAAGACAGCUCAU-UGUAUACCAUUUUU---CACGUUUAUUUAACAUAAAUGGUUACAAAGUUUCUUUUCUCCUCUCGUAGAUCAUCAUGUGGUUUUGAUCAACGUUCAG- .............((((((.((((..(-((((.(((((((..---...(((.....)))..)))))))))))))))))))))).......(((.(((((...........))))).))).....- ( -21.10, z-score = -1.87, R) >droEre2.scaffold_4690 16704983 119 + 18748788 ACUAUAAUUGAACACAACACACCACAU-UGUACACCAUUUUU---CACGUUUAUUUAACAUAAAUGGUUACAAAGUUUCUUUUCUCCUCUCGUAGAUCAUU-UGCUUUUCUGAUCAACGUUCAG- ........(((((..........((.(-((((.(((((((..---...(((.....)))..)))))))))))).))...............((.(((((..-........))))).))))))).- ( -20.10, z-score = -3.46, R) >droAna3.scaffold_13117 778115 120 + 5790199 AAAAAAAAUGAAUAAAAUAAACCGGAAGCGAGUACCGUUUCUGCACACAUUUAUUCAUCAUAAAUGGGUUUGUAAUUUCUUUUCUCCUCCCGUAGAGCAUC-----GGGAUGGACUACGAUCUGG .........(((....((((((((((((((.....))))))).....(((((((.....))))))))))))))...))).....((((((((........)-----)))).)))........... ( -30.30, z-score = -2.23, R) >consensus ACUAUAAUUGAACACAACACACCACAU_CGUAUACCAUUUUU___CACGUUUAUUUAACAUAAAUGGUUACAAAGUUUCUUUUCUCCUCUCGUAGAUCAUU___UGGUUGUGAUCAACGUUCAG_ ........(((((................(((.(((((((.....................))))))))))....................((.((((((.........)))))).))))))).. (-12.38 = -13.05 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:24:34 2011