| Sequence ID | dm3.chr2L |
|---|---|
| Location | 10,558,055 – 10,558,148 |
| Length | 93 |
| Max. P | 0.824028 |
| Location | 10,558,055 – 10,558,148 |
|---|---|
| Length | 93 |
| Sequences | 5 |
| Columns | 93 |
| Reading direction | forward |
| Mean pairwise identity | 82.59 |
| Shannon entropy | 0.29030 |
| G+C content | 0.53131 |
| Mean single sequence MFE | -26.10 |
| Consensus MFE | -19.40 |
| Energy contribution | -20.08 |
| Covariance contribution | 0.68 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.81 |
| Structure conservation index | 0.74 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.81 |
| SVM RNA-class probability | 0.824028 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 10558055 93 + 23011544 GCGAUAAGGAGUGCGUGCUGAUGAGAUGAUGAGACUGGCAUUAGACAUUAGGCACAGGAGACACAGGACUGGCAGGAUACUCUGCCUUCGAGU .(((.....(((.((((((((((...(((((.......)))))..))))).)))).(....)...).)))((((((....)))))).)))... ( -27.70, z-score = -1.64, R) >droEre2.scaffold_4929 11771685 86 - 26641161 GCGAGUGGGAGUGCGUGCUGAUGAGAUGA-----CUGGCAUUAGACAUUAGACGCAGGA--CACGGGGCUGGCAGGAAACGCUGUCUUCGAGU .((((((....(((((.((((((.((((.-----....))))...)))))))))))...--))).((((.(((.(....)))))))))))... ( -26.60, z-score = -0.89, R) >droYak2.chr2L 6967306 86 + 22324452 GCGAGGAGGAGUGCGUGCUGAUGAGAUGA-----CUGGCAUUAGACAUUAGACGCAGGA--CACGAGACUGGCAGGAAACGCUGCCUUCGAGU ((..(((((..(((((.((((((.((((.-----....))))...)))))))))))...--.........(((.(....)))).)))))..)) ( -25.50, z-score = -1.35, R) >droSec1.super_3 5984250 80 + 7220098 -----------UGCGUGCUGAUGAGAUGAUGAGACUGGCAUUAGACAUUAGACGCAGGA--CACGGAACUGGCAGGAUACUCUGCCUUCGAGU -----------(((((.((((((...(((((.......)))))..)))))))))))..(--(.((((...((((((....)))))))))).)) ( -26.10, z-score = -2.83, R) >droSim1.chr2L 10361945 80 + 22036055 -----------UGCGUGCUGAUGAGAUGAUGAGACUGGCAUUAGACAUUAGACGCAGGA--CAAGGAACUGGCAGGAUACUCUGCCUUCGAGU -----------(((((.((((((...(((((.......)))))..)))))))))))...--....(((..((((((....))))))))).... ( -24.60, z-score = -2.33, R) >consensus GCGA___GGAGUGCGUGCUGAUGAGAUGAUGAGACUGGCAUUAGACAUUAGACGCAGGA__CACGGGACUGGCAGGAUACUCUGCCUUCGAGU ...........(((((.((((((...(((((.......)))))..)))))))))))..............(((((......)))))....... (-19.40 = -20.08 + 0.68)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:30:29 2011