| Sequence ID | dm3.chrX |
|---|---|
| Location | 7,744,189 – 7,744,265 |
| Length | 76 |
| Max. P | 0.944939 |
| Location | 7,744,189 – 7,744,265 |
|---|---|
| Length | 76 |
| Sequences | 5 |
| Columns | 79 |
| Reading direction | reverse |
| Mean pairwise identity | 82.75 |
| Shannon entropy | 0.30141 |
| G+C content | 0.58917 |
| Mean single sequence MFE | -30.72 |
| Consensus MFE | -20.34 |
| Energy contribution | -20.62 |
| Covariance contribution | 0.28 |
| Combinations/Pair | 1.19 |
| Mean z-score | -2.43 |
| Structure conservation index | 0.66 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.51 |
| SVM RNA-class probability | 0.944939 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 7744189 76 - 22422827 CGAUUUCAGGGCUGGGAACACGUUCUGUUCUCAUCACGAU---AGGAUGUGCCACGGGGGAAGUCGACGUUUCCCGGCG ..........(((((((((((((((((((........)))---))))))))..(((..(.....)..))))))))))). ( -26.20, z-score = -0.97, R) >droSec1.super_50 31872 75 - 201529 CGAUUUCAGAGCUGGGAACACGUUCGGUUCUCAUCACGAU---AGGAAGUGCCA-GGGGGAAGUCAACGUUUCCCGGCG ..........((((((((.(((((.(.(((((..(((...---.....)))...-..))))).).))))))))))))). ( -27.40, z-score = -2.34, R) >droSim1.chrX 6195530 75 - 17042790 CGAUUUCAGAGCUGGGAACACGUUCGCUUCUCAUCACGAU---AGGAAGUGCCA-GGGGGAAGUCAACGUUUCCCGGCG ..........((((((((.(((((.(((((((..(((...---.....)))...-..))))))).))))))))))))). ( -31.60, z-score = -3.75, R) >droYak2.chrX 8194602 79 + 21770863 CGGUUUCAGGGCUGGGAACACGGUGUGUUCUCACUGCAUUGACAGGAAGUGCCGGUGGGGAAGCACGCGUUUCCCGGCG ..........((((((((.(((((((.(((((((((((((.......)))).))))))))).)))).))))))))))). ( -38.20, z-score = -3.59, R) >droEre2.scaffold_4690 16657219 75 - 18748788 CGAUUCCAGGGCUGGGAACACGGUCUGUUCCCAGUGCGUG---AGGAAGUGCCAG-GAGGAAGUGCACGUUUCCCGGCG ...((((.(.((((((((((.....)))))))))).)...---.))))..(((.(-((((.........))))).))). ( -30.20, z-score = -1.49, R) >consensus CGAUUUCAGGGCUGGGAACACGUUCUGUUCUCAUCACGAU___AGGAAGUGCCA_GGGGGAAGUCAACGUUUCCCGGCG ..........((((((((.(((((...(((((..(((...........)))......)))))...))))))))))))). (-20.34 = -20.62 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:24:30 2011