| Sequence ID | dm3.chrX |
|---|---|
| Location | 7,737,923 – 7,737,984 |
| Length | 61 |
| Max. P | 0.961567 |
| Location | 7,737,923 – 7,737,984 |
|---|---|
| Length | 61 |
| Sequences | 4 |
| Columns | 61 |
| Reading direction | reverse |
| Mean pairwise identity | 69.42 |
| Shannon entropy | 0.49936 |
| G+C content | 0.42880 |
| Mean single sequence MFE | -10.22 |
| Consensus MFE | -6.04 |
| Energy contribution | -6.35 |
| Covariance contribution | 0.31 |
| Combinations/Pair | 1.23 |
| Mean z-score | -1.77 |
| Structure conservation index | 0.59 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.70 |
| SVM RNA-class probability | 0.961567 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 7737923 61 - 22422827 CACCGAUUGCUUGAAUUAAUUCCCCUUUAAAUCGAGUGACCACUGUGCUUCCAUUCGUAAG ....(.(..(((((.((((.......)))).)))))..).).................... ( -8.60, z-score = -1.51, R) >droSim1.chrX 6235705 60 - 17042790 CACCGAUUGCUUGAAUUAAUUCCCCUUUAAAUCGAGUGACCACUGUGCCCCCAUUCGGAG- ..(((((..(((((.((((.......)))).)))))..).....(((....)))))))..- ( -11.80, z-score = -2.49, R) >droSec1.super_50 27029 60 - 201529 CACCGAUUGCUUGAAUUAAUUCCCCUUUAAAUCGAGUGACCACUGUGCUCCCAUUCGGAG- ....(.(..(((((.((((.......)))).)))))..).)......((((.....))))- ( -11.90, z-score = -2.15, R) >droPer1.super_14 1244479 59 - 2168203 CAUAAAUCGCUUUAAAAAAGUUUAUCUGGUGCCUAGUGACUAACUUUGUGCUAAUGACU-- ..................((((....(((..(..(((.....)))..)..)))..))))-- ( -8.60, z-score = -0.90, R) >consensus CACCGAUUGCUUGAAUUAAUUCCCCUUUAAAUCGAGUGACCACUGUGCUCCCAUUCGGAG_ ....(.((((((((.((((.......)))).)))))))).).................... ( -6.04 = -6.35 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:24:28 2011