| Sequence ID | dm3.chrX |
|---|---|
| Location | 7,735,541 – 7,735,671 |
| Length | 130 |
| Max. P | 0.996193 |
| Location | 7,735,541 – 7,735,671 |
|---|---|
| Length | 130 |
| Sequences | 5 |
| Columns | 132 |
| Reading direction | forward |
| Mean pairwise identity | 81.09 |
| Shannon entropy | 0.32619 |
| G+C content | 0.35666 |
| Mean single sequence MFE | -30.28 |
| Consensus MFE | -21.74 |
| Energy contribution | -22.98 |
| Covariance contribution | 1.24 |
| Combinations/Pair | 1.29 |
| Mean z-score | -3.05 |
| Structure conservation index | 0.72 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.90 |
| SVM RNA-class probability | 0.996193 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 7735541 130 + 22422827 GGAUCUACAGAAAUCGCACAGGAUUGAAAAUUUCAAGACAUUUCUUUCUUUCCAAAUAAAUGAA--UCUGAUGCUUUCGAAAACGUUUUAAAAAAAUAUGCAAAUCGUGCUGCGAUUUCUGUGACACCUCUG ((...(((((((((((((((.((((.....(((((((.((((...(((.............)))--...)))))))..))))..((.............)).)))).)).)))))))))))))...)).... ( -30.24, z-score = -2.76, R) >droEre2.scaffold_4690 16650389 124 + 18748788 GGAUCUAUAGAUAUCUCUCAGGAUUGCCAAUUUCCAGACACUUGUUUC-----AAACAAAUGAA--UUUAAUGCUUUCAAAAUCCUUCUAAAGCUAU-UACAAAUCCUGCUGCGAAUUCUGUGACACCCCUG ((...((((((..((.(.(((((((.............((.((((...-----..)))).))..--..(((((((((..((....))..))))).))-))..)))))))..).))..))))))...)).... ( -20.10, z-score = -1.05, R) >droYak2.chrX 8186701 125 - 21770863 GGAUCUACAGAUAUCGCGCGGGAUUGCAAGUUUCAGGAUAUUUCUUUC-----GCAUAAAUGAUGCUAUGAUCCUUUCAAAAUCCUUUCAAAGUUAU-UGCAAAUCCUGUUGCGAUUUCUGUGAU-UUCCUG (((..((((((.(((((((((((((((((.....(((((.........-----((((.....))))..(((.....)))..)))))..........)-))).))))))).)))))).))))))..-.))).. ( -40.26, z-score = -4.53, R) >droSec1.super_50 24649 129 + 201529 GGAUCUACAGAAAUAGCACAGGAUUGAAAAUUUCAAGACAUUUCUUUCUUUCCAAAUAAAUGAU--UUUAAUGCUUUCGAAACCGUUUUAAAAAA-UAUACAAGUCCUGCUGUGAUUUCUGUGACACCUCUG ((...(((((((((.((((((((((.............(((((.(((......))).))))).(--(((((.((..........)).))))))..-......))))))).))).)))))))))...)).... ( -26.20, z-score = -2.08, R) >droSim1.chrX 6233231 129 + 17042790 GGAUCUACAGAAAUCGCUCAGGAUUGAAAAUUUCAAGACAUUUCUUUCUUUCCAAAUAAAUGAA--UUUGAUGCUUUCGAAACCGUUUUAAAAAA-UGUACAAAUCCUGCUGCGAUUUCUGUGACACCCCUG ((...((((((((((((.(((((((((((...(((((.(((((.(((......))).)))))..--)))))...)))).....(((((....)))-))....)))))))..))))))))))))...)).... ( -34.60, z-score = -4.81, R) >consensus GGAUCUACAGAAAUCGCACAGGAUUGAAAAUUUCAAGACAUUUCUUUCUUUCCAAAUAAAUGAA__UUUGAUGCUUUCGAAACCGUUUUAAAAAAAU_UACAAAUCCUGCUGCGAUUUCUGUGACACCCCUG ((...((((((((((((((((((((.............(((((.(((......))).)))))....(((((.....))))).....................))))))).)))))))))))))...)).... (-21.74 = -22.98 + 1.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:24:27 2011