| Sequence ID | dm3.chrX |
|---|---|
| Location | 7,727,943 – 7,727,994 |
| Length | 51 |
| Max. P | 0.793288 |
| Location | 7,727,943 – 7,727,994 |
|---|---|
| Length | 51 |
| Sequences | 4 |
| Columns | 51 |
| Reading direction | forward |
| Mean pairwise identity | 71.24 |
| Shannon entropy | 0.46502 |
| G+C content | 0.49510 |
| Mean single sequence MFE | -12.65 |
| Consensus MFE | -8.41 |
| Energy contribution | -7.98 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.46 |
| Mean z-score | -1.16 |
| Structure conservation index | 0.67 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.71 |
| SVM RNA-class probability | 0.793288 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 7727943 51 + 22422827 GACCCUGGGAAGUCACGAUAAGUGCACUUCCUUCGCCCCAAAGUCGGAGUA ......((((((((((.....))).)))))))..((.((......)).)). ( -14.40, z-score = -1.29, R) >droSim1.chrX 6225806 51 + 17042790 GAACCUGGGAAGUCACGAUAAGUGCACUUCCUUCGCCCCAAAGUCGGAGUA ......((((((((((.....))).)))))))..((.((......)).)). ( -14.40, z-score = -1.40, R) >droSec1.super_50 17258 51 + 201529 GAACCUGGGAAGUCACGAUAAGUGCACUUCCUUCGCCCCAAAGUCGGAGUA ......((((((((((.....))).)))))))..((.((......)).)). ( -14.40, z-score = -1.40, R) >droAna3.scaffold_13117 4171615 51 - 5790199 GACUGUAGACAGACUUUGUAAGAUAUCCAACCGGAUCUGAAAGAAAAAGUA ..(((....)))(((((...(((..(((....)))))).......))))). ( -7.40, z-score = -0.54, R) >consensus GAACCUGGGAAGUCACGAUAAGUGCACUUCCUUCGCCCCAAAGUCGGAGUA .......(((((((((.....))).))))))...((.((......)).)). ( -8.41 = -7.98 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:24:22 2011