| Sequence ID | dm3.chrX |
|---|---|
| Location | 7,726,728 – 7,726,831 |
| Length | 103 |
| Max. P | 0.946439 |
| Location | 7,726,728 – 7,726,831 |
|---|---|
| Length | 103 |
| Sequences | 3 |
| Columns | 103 |
| Reading direction | reverse |
| Mean pairwise identity | 87.67 |
| Shannon entropy | 0.16048 |
| G+C content | 0.41048 |
| Mean single sequence MFE | -14.74 |
| Consensus MFE | -13.13 |
| Energy contribution | -13.13 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.08 |
| Structure conservation index | 0.89 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.52 |
| SVM RNA-class probability | 0.946439 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 7726728 103 - 22422827 GGGUUAUUGUCUCAAUCGACCCCCGGCCCCCUUCAAAACCCUCCACCAUAUAUAUAUGUAGAUGUACAAUACCUCCAUCUCUAUCUGCCUAUAUUUAUAACUA (((((...(((......)))....)))))..................(((.(((((.(((((((.................))))))).))))).)))..... ( -16.03, z-score = -1.77, R) >droSim1.chrX 6172678 86 - 17042790 GGGUUAUUGUCUCAAUCGACCCC----------CCAAACCCUCCACC--AUAUAUAUGUAGAUG-----UACCUCCAUCUCUAUCUGCCUAUAUUUAUAACUA (((((...(((......)))...----------...)))))......--..(((((.(((((((-----............))))))).)))))......... ( -14.10, z-score = -2.24, R) >droSec1.super_50 16045 86 - 201529 GGGUUAUUGUCUCAAUCGACCCC----------CCAAACCCUCCACC--AUAUAUAUGUAGAUG-----UACCUCCAUCUCUAUCUGCCUAUAUUUAUAACUA (((((...(((......)))...----------...)))))......--..(((((.(((((((-----............))))))).)))))......... ( -14.10, z-score = -2.24, R) >consensus GGGUUAUUGUCUCAAUCGACCCC__________CCAAACCCUCCACC__AUAUAUAUGUAGAUG_____UACCUCCAUCUCUAUCUGCCUAUAUUUAUAACUA (((((((((...)))).))))).............................(((((.(((((((.................))))))).)))))......... (-13.13 = -13.13 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:24:22 2011