| Sequence ID | dm3.chrX |
|---|---|
| Location | 7,723,235 – 7,723,302 |
| Length | 67 |
| Max. P | 0.622645 |
| Location | 7,723,235 – 7,723,302 |
|---|---|
| Length | 67 |
| Sequences | 6 |
| Columns | 76 |
| Reading direction | reverse |
| Mean pairwise identity | 77.37 |
| Shannon entropy | 0.42464 |
| G+C content | 0.48550 |
| Mean single sequence MFE | -20.97 |
| Consensus MFE | -12.58 |
| Energy contribution | -14.88 |
| Covariance contribution | 2.31 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.38 |
| Structure conservation index | 0.60 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.27 |
| SVM RNA-class probability | 0.622645 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 7723235 67 - 22422827 CUAUUUCCUUGA--ACGCUGCUGUGUUUCAA------AGCACUUGCAGCAGAUUGGGGC-AGCCACUUAAAGUGGA ......(((..(--.((((((.(((((....------)))))..))))).).)..))).-..((((.....)))). ( -23.20, z-score = -1.85, R) >droSim1.chrX 6169208 67 - 17042790 CUAUUUCCUUGA--ACGCUGCUGUGUUUCGA------AGCACUUGCAGCAGAUUGGGGC-AGCCACUUAAAAUGGA (((((((((..(--.((((((.(((((....------)))))..))))).).)..))).-.........)))))). ( -19.40, z-score = -0.96, R) >droSec1.super_50 12679 67 - 201529 CUAUUUCCUUGA--ACGCUGCUGUGUUUCGA------AGCACUUGCAGCAGAUUGGGGC-AGCCACUUAAAGUGGA ......(((..(--.((((((.(((((....------)))))..))))).).)..))).-..((((.....)))). ( -23.20, z-score = -1.85, R) >droYak2.chrX 8173473 73 + 21770863 AUAUUUCCUUGA--ACGCUGCUGUGACUCGAAGCAGCAGCACUUGCAGCAGAUUGGGGC-AGCCACUUAAAGUGGA ......(((..(--..((((((((........)))))))).((......)).)..))).-..((((.....)))). ( -23.10, z-score = -0.71, R) >droEre2.scaffold_4690 16639029 67 - 18748788 CUAUUUCCUUGA--ACGCUGCUGUGCUUCGA------GGCACUUGCAGCAGAUUGGGGC-AGCCACUUCAAGUGGA ......(((..(--.((((((.(((((....------)))))..))))).).)..))).-..((((.....)))). ( -25.90, z-score = -1.95, R) >droAna3.scaffold_13117 4167771 76 + 5790199 UGAUUUCCUAUACUUCUCCCCCAAACUUCUCCAAUUUAAGCCCCAAAACAGAUUGUUUCUGGCCACUUAAAGUGGC ................................................((((.....))))(((((.....))))) ( -11.00, z-score = -0.97, R) >consensus CUAUUUCCUUGA__ACGCUGCUGUGUUUCGA______AGCACUUGCAGCAGAUUGGGGC_AGCCACUUAAAGUGGA ......(((..(....(((((.(((((..........)))))..)))))...)..)))....((((.....)))). (-12.58 = -14.88 + 2.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:24:21 2011