| Sequence ID | dm3.chr2L |
|---|---|
| Location | 907,553 – 907,651 |
| Length | 98 |
| Max. P | 0.940601 |
| Location | 907,553 – 907,651 |
|---|---|
| Length | 98 |
| Sequences | 6 |
| Columns | 104 |
| Reading direction | forward |
| Mean pairwise identity | 69.74 |
| Shannon entropy | 0.57375 |
| G+C content | 0.58591 |
| Mean single sequence MFE | -32.89 |
| Consensus MFE | -18.30 |
| Energy contribution | -19.36 |
| Covariance contribution | 1.06 |
| Combinations/Pair | 1.31 |
| Mean z-score | -1.38 |
| Structure conservation index | 0.56 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.46 |
| SVM RNA-class probability | 0.940601 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 907553 98 + 23011544 CGCGCCGUUGCACCACAGAAAAAAGAGGACGGAAUGUGGGAGUGGCGGAGUAGUGGUGGACCCGGACCCGGACCUGGACUUGGA------ACCACCAGCACCAA .((.((((..(.(((((.................)))))..)..)))).....((((((..((((..(((....)))..)))).------.))))))))..... ( -35.03, z-score = -0.79, R) >droEre2.scaffold_4929 970260 104 + 26641161 CGCGCCGCUGCACCACAGAAAAAAGAGGACGGAAUGUGGCAGUGGCGGAGUAGUGGUGGAGCUGGACCCGCACCUGGACCUGGACUGGGAGCCACCAGCGCUAA ..(((((((((..((((.................)))))))))))))...(((((.(((...(((.((((..((.......))..))))..)))))).))))). ( -39.03, z-score = -0.43, R) >droYak2.chr2L 894288 98 + 22324452 CGCGCCGCUGCACCACAGAAAAAAGAGGACGGAAUGUGGGAGUGGCGGAGUAGUGGUGGACCAGGACCAGGACCUGGACUUGGA------ACCACCAGCACCGA .((.((((..(.(((((.................)))))..)..)))).....((((((.(((((.((((...)))).))))).------.))))))))..... ( -40.63, z-score = -3.09, R) >droSec1.super_14 879076 92 + 2068291 CGCGCCGUUGCACUACAGAAAAAAGAGGACGGAAUGUGGGAGUGGCGGAGUAGUGGUGGACCCGGACC------UGGACCUGGA------ACCACCAGCUAUAG ....((((..(.(((((.................)))))..)..)))).((((((((((..((((...------.....)))).------.)))))).)))).. ( -32.23, z-score = -1.83, R) >droSim1.chr2L 896720 92 + 22036055 CGCGCCGCUGCACCACAGAAAAAAGAGGACGGAAUGUGGGAGUGGCGGAGUAGUGGUGGACCCGGACC------UGGACCUGGA------ACCACCAGCUAUAG ..(((((((.(.(((((.................)))))))))))))..((((((((((..((((...------.....)))).------.)))))).)))).. ( -36.63, z-score = -2.82, R) >droWil1.scaffold_180772 2165798 89 + 8906247 ------CCCGCUCUAUAUUCUUGAGAAACUGAAUAGGUCGAGCUGCGAGUAGCUAAUUAAUACGCCCCG----UUGCACCAAAAAGUGACACAACUAGC----- ------...((((..(((((..........)))))....)))).((.(((.((..........))...(----(..(........)..))...))).))----- ( -13.80, z-score = 0.70, R) >consensus CGCGCCGCUGCACCACAGAAAAAAGAGGACGGAAUGUGGGAGUGGCGGAGUAGUGGUGGACCCGGACC_____CUGGACCUGGA______ACCACCAGCACUAA .((.(((((((.(((((.................)))))..))))))).))..((((((.((.((.((.......)).)).))........))))))....... (-18.30 = -19.36 + 1.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:07:20 2011