| Sequence ID | dm3.chrX |
|---|---|
| Location | 7,702,135 – 7,702,238 |
| Length | 103 |
| Max. P | 0.620579 |
| Location | 7,702,135 – 7,702,238 |
|---|---|
| Length | 103 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 76.21 |
| Shannon entropy | 0.44210 |
| G+C content | 0.46850 |
| Mean single sequence MFE | -26.30 |
| Consensus MFE | -15.06 |
| Energy contribution | -17.37 |
| Covariance contribution | 2.31 |
| Combinations/Pair | 1.18 |
| Mean z-score | -1.40 |
| Structure conservation index | 0.57 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.27 |
| SVM RNA-class probability | 0.620579 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 7702135 103 - 22422827 UCUGAGGUCAAUUCUCACCCCUUA-UUCCGUAUGUCAAUUGGAUCUGCUCUC----GACAGGCAGUGGUAUCUGUUUGUCGAUGUUUUU-----CAUUUAAAUAGUCCUCGGG .((((((.(...............-....(((.(((.....))).)))..((----(((((((((......))))))))))).......-----..........).)))))). ( -29.20, z-score = -2.87, R) >droSim1.chrX 6159345 103 - 17042790 UCUGAGGUCCUCUCGAACCCCUCA-UUCCGUAUGUCAAUUGGAUCUGCUCUC----GACAGGCAGUGGUAUCUGUUUGUCAAUGUUUUU-----CAUUUAAAUAGUCCUCGGG .((((((.(...............-....(((.(((.....))).)))....----(((((((((......))))))))).........-----..........).)))))). ( -25.30, z-score = -1.34, R) >droSec1.super_24 906308 103 - 912625 UCUGAGGUCAACCCGCACCCCUCA-UUCCGUAUGUCAAUUGGAUCUGCUCUC----GACAGGCAGUGGUAUCUGUUUGUCAAUGUUUUU-----CAUUUAAAUAGUCCUCGGG .((((((.(...............-....(((.(((.....))).)))....----(((((((((......))))))))).........-----..........).)))))). ( -26.20, z-score = -1.57, R) >droYak2.chrX 8159350 93 + 21770863 --------------UCUCCUCUCA-UUUCGCAUGUCAAUGGGGUCUGCUCCCGACAGACAGGCAGUGCUAUCUGUUUGUCAAUGUUUUU-----CAUUUAAAUAGUCCUCGGG --------------.((((...((-(.....))).....))))......(((((..(((((((((......)))))))))((((.....-----))))..........))))) ( -22.80, z-score = -1.52, R) >droEre2.scaffold_4690 16626528 103 - 18748788 UCUGAGGUCAACACUCUACCCUCA-UUCCGUAUGUCGAUUGGCUCUGCUCCC----GACAGGCAGUGGUAUCUGUUUGUCAAUGUUUUU-----CAUUUAAAUAGUCCUCGGG .((((((.(...............-....(((.(((....)))..)))....----(((((((((......))))))))).........-----..........).)))))). ( -25.30, z-score = -1.25, R) >droAna3.scaffold_13117 4156231 107 + 5790199 --AGCCCCCAUCCCCCAGAGGCCACUUUCGGAGGGCUUCAGUCUCUGCUCUC----GACAGGCACAGGAUUUCGUUUGUCAAUGUUUUUAUGUAGACUUGAACAGUCCAUGGG --....(((((..((.((((....)))).)).(((((((((..(((((....----(((((((..........))))))).(((....)))))))).))))..)))))))))) ( -29.00, z-score = 0.15, R) >consensus UCUGAGGUCAACCCUCACCCCUCA_UUCCGUAUGUCAAUUGGAUCUGCUCUC____GACAGGCAGUGGUAUCUGUUUGUCAAUGUUUUU_____CAUUUAAAUAGUCCUCGGG .((((((.(....................(((.(((.....))).)))........(((((((((......)))))))))........................).)))))). (-15.06 = -17.37 + 2.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:24:18 2011