| Sequence ID | dm3.chrX |
|---|---|
| Location | 7,684,740 – 7,684,838 |
| Length | 98 |
| Max. P | 0.779798 |
| Location | 7,684,740 – 7,684,838 |
|---|---|
| Length | 98 |
| Sequences | 5 |
| Columns | 98 |
| Reading direction | forward |
| Mean pairwise identity | 76.22 |
| Shannon entropy | 0.43117 |
| G+C content | 0.42791 |
| Mean single sequence MFE | -23.94 |
| Consensus MFE | -12.92 |
| Energy contribution | -13.40 |
| Covariance contribution | 0.48 |
| Combinations/Pair | 1.22 |
| Mean z-score | -1.77 |
| Structure conservation index | 0.54 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.67 |
| SVM RNA-class probability | 0.779798 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 7684740 98 + 22422827 UUUGUGAUAUUUUUACACUCGGAAGCUGGAAAACUCUGAACUGCACUGGUAGACGACUAAAAUGUUGAGGAUGACACUUCCGUGUUAUCUACUCUCGU ..(((((.....))))).(((((.(.(....).)))))).((((....)))).((((......)))).(((((((((....)))))))))........ ( -22.30, z-score = -1.20, R) >droAna3.scaffold_13117 4137571 80 - 5790199 -----------UCUGCACU-----GCGAACGAGUUCAGGAG-GCAGUGA-GUUCAGGCACAGGAUCCAGGAUGACACUUCCGUGUUAUCUCUGCUCUC -----------.((((.((-----.((((....))).).))-)))).((-(..(((.....(....).(((((((((....))))))))))))..))) ( -23.20, z-score = 0.34, R) >droEre2.scaffold_4690 16609111 98 + 18748788 UUUUUAAUAUUUGUACACUCGGAAGCUGGAAAACUCUGAACUGCACUGGCAGACGACUAAAAUGUUGAGGAUGACACUUCCGUGUUAUCUACUUUCGU ...(((((((((......(((((.(.(....).)))))).((((....)))).......)))))))))(((((((((....)))))))))........ ( -23.80, z-score = -2.14, R) >droSec1.super_24 888878 98 + 912625 UUUUUGAUAUUUUUACACUCGGAUGCUGGAAAACUCUGAACUGUACUGGCAGACGACUAAAAUGUUGAGGAUGACACUUCCGUGUUAUCAACUCUCUU ..((..(((((((.....(((..(((..(...((........)).)..)))..)))..)))))))..))((((((((....))))))))......... ( -26.40, z-score = -3.75, R) >droSim1.chrX 10853510 98 - 17042790 UUUUUGAUAUUUUUACACUCGGAAGCUGGAGAACUCUGAACUGCACUGGCAGACGACUAAAAUGUUGAGGAUGACACUUCCGUGUUAUCAACUCUCUU ...((((((.......((.((((((.((..(..(((....((((....))))..(((......))))))..)..)))))))).))))))))....... ( -24.01, z-score = -2.10, R) >consensus UUUUUGAUAUUUUUACACUCGGAAGCUGGAAAACUCUGAACUGCACUGGCAGACGACUAAAAUGUUGAGGAUGACACUUCCGUGUUAUCUACUCUCUU .................(((....................((((....))))..(((......))))))((((((((....))))))))......... (-12.92 = -13.40 + 0.48)
| Location | 7,684,740 – 7,684,838 |
|---|---|
| Length | 98 |
| Sequences | 5 |
| Columns | 98 |
| Reading direction | reverse |
| Mean pairwise identity | 76.22 |
| Shannon entropy | 0.43117 |
| G+C content | 0.42791 |
| Mean single sequence MFE | -20.52 |
| Consensus MFE | -12.04 |
| Energy contribution | -13.16 |
| Covariance contribution | 1.12 |
| Combinations/Pair | 1.15 |
| Mean z-score | -1.34 |
| Structure conservation index | 0.59 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.18 |
| SVM RNA-class probability | 0.582838 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 7684740 98 - 22422827 ACGAGAGUAGAUAACACGGAAGUGUCAUCCUCAACAUUUUAGUCGUCUACCAGUGCAGUUCAGAGUUUUCCAGCUUCCGAGUGUAAAAAUAUCACAAA ..(((.(((((..((...(((((((........))))))).))..))))))..((((.((..((((......))))..)).))))......))..... ( -19.50, z-score = -1.33, R) >droAna3.scaffold_13117 4137571 80 + 5790199 GAGAGCAGAGAUAACACGGAAGUGUCAUCCUGGAUCCUGUGCCUGAAC-UCACUGC-CUCCUGAACUCGUUCGC-----AGUGCAGA----------- ..((.(((.(((.((((....)))).))))))..))...........(-(((((((-.....(((....)))))-----)))).)).----------- ( -22.80, z-score = -0.32, R) >droEre2.scaffold_4690 16609111 98 - 18748788 ACGAAAGUAGAUAACACGGAAGUGUCAUCCUCAACAUUUUAGUCGUCUGCCAGUGCAGUUCAGAGUUUUCCAGCUUCCGAGUGUACAAAUAUUAAAAA ......(((((..((...(((((((........))))))).))..)))))..(((((.((..((((......))))..)).)))))............ ( -22.30, z-score = -2.42, R) >droSec1.super_24 888878 98 - 912625 AAGAGAGUUGAUAACACGGAAGUGUCAUCCUCAACAUUUUAGUCGUCUGCCAGUACAGUUCAGAGUUUUCCAGCAUCCGAGUGUAAAAAUAUCAAAAA ..(((((..(((.((((....)))).)))))).......((.(((..(((..(.((........))...)..)))..))).))........))..... ( -18.20, z-score = -1.43, R) >droSim1.chrX 10853510 98 + 17042790 AAGAGAGUUGAUAACACGGAAGUGUCAUCCUCAACAUUUUAGUCGUCUGCCAGUGCAGUUCAGAGUUCUCCAGCUUCCGAGUGUAAAAAUAUCAAAAA ..(((((..(((.((((....)))).)))))).((((((.....(.((((....))))..).((((......))))..)))))).......))..... ( -19.80, z-score = -1.18, R) >consensus AAGAGAGUAGAUAACACGGAAGUGUCAUCCUCAACAUUUUAGUCGUCUGCCAGUGCAGUUCAGAGUUUUCCAGCUUCCGAGUGUAAAAAUAUCAAAAA ..(((....(((.((((....)))).)))))).....................((((.((..((((......))))..)).))))............. (-12.04 = -13.16 + 1.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:24:17 2011