Locus 13596

Sequence ID dm3.chrX
Location 7,683,511 – 7,683,581
Length 70
Max. P 0.636724
window18714

overview

Window 4

Location 7,683,511 – 7,683,581
Length 70
Sequences 5
Columns 74
Reading direction forward
Mean pairwise identity 77.09
Shannon entropy 0.41104
G+C content 0.40777
Mean single sequence MFE -16.26
Consensus MFE -9.48
Energy contribution -9.88
Covariance contribution 0.40
Combinations/Pair 1.00
Mean z-score -1.54
Structure conservation index 0.58
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.30
SVM RNA-class probability 0.636724
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 7683511 70 + 22422827
----ACAGAUUGUUAGCUUAGAUGUCCUUUCAACAGGACCUCAUUAGGAGUCGAACUUAACAGUUUGAAACGUU
----.(((((((((((.((.((.(((((......)))))(((.....))))).)).)))))))))))....... ( -17.60, z-score =  -2.02, R)
>droEre2.scaffold_4690 16607892 53 + 18748788
---------------------AUGUCCUUGCAAGAGGACCUCAUUAGGCGUCGAACUUAACAGUGGGAAGCGAU
---------------------..((((((....))))))........((.((..(((....)))..)).))... ( -11.80, z-score =  -0.18, R)
>droYak2.chrX 8137935 74 - 21770863
CCAUAUUGUUUUUUUUUAGAUUUGUCCUUGCAACAGGACCUCAUUAGGCGUCGAACCUAACAGUUUGAAGCGAG
..................((...(((((......))))).)).....((.((((((......)))))).))... ( -13.40, z-score =  -0.68, R)
>droSec1.super_24 887685 70 + 912625
----ACAGAUUGUUGGUUUAGAUGUCCUUUCAACAGGACCUCAUUAGGAGUCGAACUUAACAGUUUGAAACGUU
----.((((((((((((((....(((((......)))))(((.....)))..)))).))))))))))....... ( -19.10, z-score =  -2.08, R)
>droSim1.chrX 10852320 70 - 17042790
----ACAGAUUGUUAGUUUAGAUGUCCUUUCAACAGGACCUCAUUAGGAGUCGAACUUAACAGUUUGAAACGUU
----.((((((((((((((....(((((......)))))(((.....)))..)))).))))))))))....... ( -19.40, z-score =  -2.73, R)
>consensus
____ACAGAUUGUUAGUUUAGAUGUCCUUUCAACAGGACCUCAUUAGGAGUCGAACUUAACAGUUUGAAACGUU
.......................(((((......))))).......(...((((((......))))))..)... ( -9.48 =  -9.88 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:24:16 2011