| Sequence ID | dm3.chrX |
|---|---|
| Location | 7,657,767 – 7,657,837 |
| Length | 70 |
| Max. P | 0.897686 |
| Location | 7,657,767 – 7,657,837 |
|---|---|
| Length | 70 |
| Sequences | 5 |
| Columns | 71 |
| Reading direction | forward |
| Mean pairwise identity | 92.06 |
| Shannon entropy | 0.14030 |
| G+C content | 0.48686 |
| Mean single sequence MFE | -24.10 |
| Consensus MFE | -14.52 |
| Energy contribution | -14.92 |
| Covariance contribution | 0.40 |
| Combinations/Pair | 1.12 |
| Mean z-score | -2.87 |
| Structure conservation index | 0.60 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.53 |
| SVM RNA-class probability | 0.730124 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 7657767 70 + 22422827 AAAAGCUGCAAAGUUUUUCCUCGAGAGUCACUCGAGCCAUGUGGAUUU-CCAGAAGGAAAUGCUCUGCAAG ......((((.(((.((((((((((.....)))))....(.(((....-))).).))))).))).)))).. ( -21.60, z-score = -2.01, R) >droEre2.scaffold_4690 16583019 66 + 18748788 AAAAGCCGCAAAGUUUUUCCUCGAGAGUCACUCGAGCCAUGUGGCUUU-CCAGAAGGA----CUCGGCAAG ....((((...((((((((...(((((((((.........))))))))-)..))))))----))))))... ( -25.30, z-score = -3.25, R) >droYak2.chrX 8111818 67 - 21770863 AAAAGCGGCAAAGUUUUUCCACGAGAGUCACUCGAGCCAUGUGGCUUUUCCAGAAGGA----CUUCGCCAG ......(((.(((((((((...(((((((((.........)))))))))...))))))----))).))).. ( -25.00, z-score = -3.44, R) >droSec1.super_24 862756 66 + 912625 AAAAGCUGCAAAGUUUUUCCUUGAGAGUCACUCGAGCCAUGUGGCUUU-CCAGAAGGA----CUCUGCAAG ......((((.((((((((...(((((((((.........))))))))-)..))))))----)).)))).. ( -24.30, z-score = -2.79, R) >droSim1.chrX 6129900 66 + 17042790 AAAAGCUGCAAAGUUUUUCCUCGAGAGUCACUCGAGCCAUGUGGCUUU-CCAGAAGGA----CUCUGCAAG ......((((.((((((((...(((((((((.........))))))))-)..))))))----)).)))).. ( -24.30, z-score = -2.87, R) >consensus AAAAGCUGCAAAGUUUUUCCUCGAGAGUCACUCGAGCCAUGUGGCUUU_CCAGAAGGA____CUCUGCAAG ......((((.((....(((.((((.....))))((((....)))).........)))....)).)))).. (-14.52 = -14.92 + 0.40)
| Location | 7,657,767 – 7,657,837 |
|---|---|
| Length | 70 |
| Sequences | 5 |
| Columns | 71 |
| Reading direction | reverse |
| Mean pairwise identity | 92.06 |
| Shannon entropy | 0.14030 |
| G+C content | 0.48686 |
| Mean single sequence MFE | -22.16 |
| Consensus MFE | -19.60 |
| Energy contribution | -19.32 |
| Covariance contribution | -0.28 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.95 |
| Structure conservation index | 0.88 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.14 |
| SVM RNA-class probability | 0.897686 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 7657767 70 - 22422827 CUUGCAGAGCAUUUCCUUCUGG-AAAUCCACAUGGCUCGAGUGACUCUCGAGGAAAAACUUUGCAGCUUUU .((((((((..(((((...(((-....)))......(((((.....))))))))))..))))))))..... ( -22.30, z-score = -2.25, R) >droEre2.scaffold_4690 16583019 66 - 18748788 CUUGCCGAG----UCCUUCUGG-AAAGCCACAUGGCUCGAGUGACUCUCGAGGAAAAACUUUGCGGCUUUU ...((((((----((...((.(-(..(((....))))).)).))))).(((((.....))))).))).... ( -20.40, z-score = -1.10, R) >droYak2.chrX 8111818 67 + 21770863 CUGGCGAAG----UCCUUCUGGAAAAGCCACAUGGCUCGAGUGACUCUCGUGGAAAAACUUUGCCGCUUUU ..(((((((----(..((((.....((((....))))((((.....)))).))))..))))))))...... ( -23.70, z-score = -2.71, R) >droSec1.super_24 862756 66 - 912625 CUUGCAGAG----UCCUUCUGG-AAAGCCACAUGGCUCGAGUGACUCUCAAGGAAAAACUUUGCAGCUUUU .((((((((----(..((((..-..((((....)))).(((.....)))..))))..)))))))))..... ( -20.90, z-score = -1.50, R) >droSim1.chrX 6129900 66 - 17042790 CUUGCAGAG----UCCUUCUGG-AAAGCCACAUGGCUCGAGUGACUCUCGAGGAAAAACUUUGCAGCUUUU .((((((((----(..((((..-...(((....)))(((((.....)))))))))..)))))))))..... ( -23.50, z-score = -2.21, R) >consensus CUUGCAGAG____UCCUUCUGG_AAAGCCACAUGGCUCGAGUGACUCUCGAGGAAAAACUUUGCAGCUUUU .((((((((....(((((.......((((....)))).(((.....))))))))....))))))))..... (-19.60 = -19.32 + -0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:24:15 2011