| Sequence ID | dm3.chrX |
|---|---|
| Location | 7,657,456 – 7,657,579 |
| Length | 123 |
| Max. P | 0.513049 |
| Location | 7,657,456 – 7,657,579 |
|---|---|
| Length | 123 |
| Sequences | 3 |
| Columns | 131 |
| Reading direction | forward |
| Mean pairwise identity | 69.35 |
| Shannon entropy | 0.42626 |
| G+C content | 0.42413 |
| Mean single sequence MFE | -20.43 |
| Consensus MFE | -4.60 |
| Energy contribution | -4.93 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -3.03 |
| Structure conservation index | 0.23 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.04 |
| SVM RNA-class probability | 0.513049 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 7657456 123 + 22422827 ACAAAACAUGCUCACACAUACGAGUAUACUCGUACAUG--------UGUAUGUGCAGUUUUCCGCAGCUGCUUGACUGCCAACUCUUUCCCCCCAACAUUUUCCAUUUUCCAUCCACUUCAGCACUCCUUU ........((((.(((((((((((....))))))..))--------))).((.((((((....((....))..)))))))).......................................))))....... ( -25.10, z-score = -4.01, R) >droEre2.scaffold_4690 16582708 109 + 18748788 ACAAAACAUGAUCACACAUACGAGUAUG----------------------UGUGCAGUUUUCCGCAGCUGCUUUGCCACCAACUCUUUCCAUAUUCCAUUUUCCAUUUUCCAUCCACUUCAGCACUCCUUU ........(((..(((((((....))))----------------------)))((((((......))))))...............................................))).......... ( -14.80, z-score = -1.74, R) >droYak2.chrX 8111471 124 - 21770863 GCUAAAGAGGCUCACAAAUAUACAUAUGUACAUAUGUACAUAUACAUGUAUGUGCAAUUUUCCGCAGCUGCCUUACCACCA-CAUUUCCCAUUUCCCAUUUUCC------CAUCCACUUCAGCACUCCUUU (((.(((.((..((((.((((..((((((((....))))))))..)))).)))).........((....))..........-......................------...)).))).)))........ ( -21.40, z-score = -3.33, R) >consensus ACAAAACAUGCUCACACAUACGAGUAUG__C_UA__U_________UGUAUGUGCAGUUUUCCGCAGCUGCUUUACCACCAACUCUUUCCAUAUACCAUUUUCCAUUUUCCAUCCACUUCAGCACUCCUUU .....................................................((((((......))))))............................................................ ( -4.60 = -4.93 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:24:13 2011