| Sequence ID | dm3.chrX |
|---|---|
| Location | 7,653,366 – 7,653,417 |
| Length | 51 |
| Max. P | 0.909466 |
| Location | 7,653,366 – 7,653,417 |
|---|---|
| Length | 51 |
| Sequences | 7 |
| Columns | 51 |
| Reading direction | reverse |
| Mean pairwise identity | 92.72 |
| Shannon entropy | 0.14127 |
| G+C content | 0.34454 |
| Mean single sequence MFE | -10.47 |
| Consensus MFE | -9.47 |
| Energy contribution | -9.84 |
| Covariance contribution | 0.37 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.88 |
| Structure conservation index | 0.90 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.21 |
| SVM RNA-class probability | 0.909466 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 7653366 51 - 22422827 GAAAGGUUUUAUGUUUAGGUCAUCGAUAUGCAAAUUGAUUGACAAAAACAC ...........(((((..(((((((((......))))).))))..))))). ( -10.70, z-score = -2.33, R) >droSim1.chrX 6124303 51 - 17042790 GAAAGGUUUUAUGUUUAGGUCAUCGAUAUGCAAAUUGAUUGACAAAAACAC ...........(((((..(((((((((......))))).))))..))))). ( -10.70, z-score = -2.33, R) >droSec1.super_24 858352 51 - 912625 GAAAGGUUUUAUGUUUAGGUCAUCGAUAUGCAAAUUGAUUGACAAAAACAC ...........(((((..(((((((((......))))).))))..))))). ( -10.70, z-score = -2.33, R) >droYak2.chrX 8107081 51 + 21770863 GAAGGGUUUUAUGUUUAGGUCAUCGAUAUGCAAAUUGAUUGACAAAAACAC ...........(((((..(((((((((......))))).))))..))))). ( -10.70, z-score = -2.31, R) >droEre2.scaffold_4690 16578621 51 - 18748788 GAAAGGUUUUAUGUUUAGGUCAUCGAUAUGCAAAUUGAUUGACAAAAACAC ...........(((((..(((((((((......))))).))))..))))). ( -10.70, z-score = -2.33, R) >droVir3.scaffold_13042 2381164 51 - 5191987 CGAGCGUUUUAUGUUUAGGUCAUCGAUAUGCAAAUUGAUUGACAGGCUCAC .((((...(((....)))(((((((((......))))).))))..)))).. ( -11.90, z-score = -1.56, R) >droMoj3.scaffold_6328 3255663 51 + 4453435 GCAACGUUUUAUGUUUAGGUCAUCGAUAUGCAAAUUGAUUGACAGGCCCAC (((((((...)))))...(((((((((......))))).))))..)).... ( -7.90, z-score = 0.05, R) >consensus GAAAGGUUUUAUGUUUAGGUCAUCGAUAUGCAAAUUGAUUGACAAAAACAC ...........(((((..(((((((((......))))).))))..))))). ( -9.47 = -9.84 + 0.37)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:24:12 2011