| Sequence ID | dm3.chr2L |
|---|---|
| Location | 10,553,978 – 10,554,085 |
| Length | 107 |
| Max. P | 0.568764 |
| Location | 10,553,978 – 10,554,085 |
|---|---|
| Length | 107 |
| Sequences | 12 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 69.44 |
| Shannon entropy | 0.67096 |
| G+C content | 0.48430 |
| Mean single sequence MFE | -27.21 |
| Consensus MFE | -11.33 |
| Energy contribution | -11.63 |
| Covariance contribution | 0.31 |
| Combinations/Pair | 1.41 |
| Mean z-score | -0.94 |
| Structure conservation index | 0.42 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.15 |
| SVM RNA-class probability | 0.568764 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 10553978 107 - 23011544 GCAGCCGGCGAAGAAAUUUAAAACGUCAACAAGACCGUUGACAGUUGGCGCUGUGCAGGACUC----GUAAAAAACUGC--GUCACUCGGAUGGGGAUGCCCUGUGUGUAUAU ((.(((((((((....))).....((((((......)))))).)))))))).(..((((....----((.....)).((--(((.(((....))))))))))))..)...... ( -34.50, z-score = -1.50, R) >droPer1.super_10 1769819 104 - 3432795 GCAGCCUGCAAAGAAAUUUAAAACGUCAACAAGCCCGUUGACAGUUGGCGCUGUGCAGGAAUC----GUAAAAAAAAACC-CCCCGCCACAUGGACA-GAGGAGGAUGUG--- (((.((((((.((........(((((((((......)))))).)))....)).))))))....----...........((-((.(.((....))...-).)).)).))).--- ( -26.30, z-score = -0.74, R) >dp4.chr4_group4 2761602 104 - 6586962 GCAGCCUGCAAAGAAAUUUAAAACGUCAACAAGCCCGUUGACAGUUGGCGCUGUGCAGGAAUC----GUAAAAAAAAACC-CCCCGCCACAUGGACA-GAGGAGGAUGUG--- (((.((((((.((........(((((((((......)))))).)))....)).))))))....----...........((-((.(.((....))...-).)).)).))).--- ( -26.30, z-score = -0.74, R) >droAna3.scaffold_12916 14404170 109 - 16180835 GCAGCUAGCAAAGAAAUUUAAAACGUCAACAAGCCCAUUGACAGUUGGCGCUGUGCAGGACUC----GUAAAAAAAGGCUGCCCCCUCGAAUAGGGAUGCCUUUCAUAUACAC ((.(((((((((....))).....(((((........))))).))))))))............----(((...((((((....((((.....))))..))))))....))).. ( -26.80, z-score = -0.68, R) >droEre2.scaffold_4929 11767633 95 + 26641161 GCAGCCAGCGGAGAAAUUUAAAACGUCAACAAGCCCGUUGACAGUUGGCGCUGUGCAGGACUC----GUAAAAAACCGC--GCCACUCGGAUGGGGAUGCC------------ (((.(((.(.(((...........((((((......))))))...((((((.((.........----.......)).))--))))))).).)))...))).------------ ( -30.09, z-score = -0.61, R) >droYak2.chr2L 6963100 95 - 22324452 GCAGCCAGCGAAGAAAUUUAAAACGUCAACAAGCCCGUUGACAGUUGGCGCUGUGCAGGACUC----GUAAAAAACUGC--GCCACUCGGAUAGGGAUGUC------------ ((.(((((((((....))).....((((((......)))))).)))))))).((((((.....----........))))--))..(((.....))).....------------ ( -30.22, z-score = -1.63, R) >droSec1.super_3 5980275 107 - 7220098 GCAGUCGGCGAAGAAAUUUAAAACGUCAACAAGCCCGUUGACAGUUGGCGCUGUGCAGGACUC----GUAAAAAACUGC--GUCACUCGGUUGGGGAUGCCCAGUACAUAUAU ((.(((((((((....))).....((((((......)))))).))))))))(((((.((....----((.....)).((--(((.(((....)))))))))).)))))..... ( -30.60, z-score = -0.62, R) >droSim1.chr2L 10357888 107 - 22036055 GCAGCCGGCGAAGAAAUUUAAAACGUCAACAAGCCCGUUGACAGUUGGCGCUGUGCAGGACUC----GUAAAAAACUGC--GUCACUCGGAUGGGGAUGCCCAGUACAUAUAU ((.(((((((((....))).....((((((......)))))).))))))))(((((.((....----((.....)).((--(((.(((....)))))))))).)))))..... ( -33.30, z-score = -1.41, R) >droWil1.scaffold_180708 10800148 82 - 12563649 --------CAAAAAAACUGAAACCGUCAACAAGCUCGUUGACAGUUGGCACUCUGCAGGACAU----AUAAAAAAUGUCG-GCAAUAUAUAUGUG------------------ --------.........((.(((.((((((......)))))).)))..))...(((..(((((----.......))))).-)))...........------------------ ( -17.10, z-score = -1.70, R) >droVir3.scaffold_12963 10459240 103 - 20206255 GUGGCCAGCAAAGAAAUUUAAAACGUCAACAAGCCCGUUGACAGUUGCCGCUGUGCAGGACAU-----UAAAAAACCCGCCGCUCCUCU---GUGCUCAUAUGGGCUACAG-- ((((((((((((....)))..(((((((((......)))))).)))...))))....((....-----........)))))))....((---((((((....)))).))))-- ( -30.10, z-score = -1.59, R) >droMoj3.scaffold_6500 19160863 82 - 32352404 GCAUCUCACAAAGAAAUUUAAAACGUCAACGAGCUCGUUGACAGUUGGCGCUGUGCAGGACAU-----UAAAUUGUACG-UGCAACAU------------------------- ........................(((((((....))))))).((((.(((.((((((.....-----....)))))))-))))))..------------------------- ( -22.80, z-score = -1.85, R) >droGri2.scaffold_15252 8516592 106 - 17193109 GUGGCAAGCGAAGGAAUUUAAAACGUCAACAAGCCCGUUGACAGUUGGCCCAGUGCAGGACAUAAAAAUAAAAAACACGCCGUUGCUCUUUGAUGAUGAUAUGGGA------- (..((..(((..............((((((......)))))).(((.((.....))..)))................))).))..)....................------- ( -18.40, z-score = 1.84, R) >consensus GCAGCCAGCAAAGAAAUUUAAAACGUCAACAAGCCCGUUGACAGUUGGCGCUGUGCAGGACUC____GUAAAAAACAGC__GCCACUCGGAUGGGGAUGCC__G_A__U____ ((((((.(((((....))).....((((((......)))))).)).)))....)))......................................................... (-11.33 = -11.63 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:30:27 2011