Locus 13589

Sequence ID	dm3.chrX
Location	7,645,901 – 7,645,993
Length	92
Max. P	0.924916

overview

Window 6

Location	7,645,901 – 7,645,993
Length	92
Sequences	4
Columns	92
Reading direction	forward
Mean pairwise identity	92.03
Shannon entropy	0.13094
G+C content	0.48041
Mean single sequence MFE	-31.53
Consensus MFE	-28.26
Energy contribution	-27.70
Covariance contribution	-0.56
Combinations/Pair	1.11
Mean z-score	-1.98
Structure conservation index	0.90
Background model	dinucleotide
Decision model	sequence based alignment quality
SVM decision value	1.31
SVM RNA-class probability	0.924916
Prediction	RNA

Download alignment: ClustalW | MAF

>dm3.chrX 7645901 92 + 22422827
CAAAUGCUUCGAUUUAUUUGCCUCCAAAUCUGCACAUCGUCGUCGCUUGUCCAAUGAUGAUGCCGAUGAUGAUGACGGCGAUGGGGCGGGUA
..............((((((((.(((..((.((.(((((((((((((..((....))..).).)))))))))))...))))))))))))))) ( -31.80, z-score =  -1.61, R)
>droSim1.chrX 6116848 92 + 17042790
CAAAUGUUUCGAUUUAUUUGCCUCCAAAUCUGCACAUCGUCGUCGCUUGUCCAAUGAUGAUGCUGAUGAUGAUGACGGCGAUGGGGCGGGUA
..............((((((((.(((..((.((.(((((((((((((..((....))..).)).))))))))))...))))))))))))))) ( -31.80, z-score =  -2.01, R)
>droSec1.super_24 851132 92 + 912625
CAAAUGUUUCGAUUUAUUUGCCUCCAAAUCUGCACAUCGUCGUCGCUUGUCCAAUGAUGAUGCUGAUGAUGAUGACGGCGAUGGGGCGGGUA
..............((((((((.(((..((.((.(((((((((((((..((....))..).)).))))))))))...))))))))))))))) ( -31.80, z-score =  -2.01, R)
>droYak2.chrX 8099762 86 - 21770863
CAAAUGUUUCGAUUUAUUUGCGGCCAAAUCUGCACAUCGUCGUCGCUUGUCCAAUG------UGGAUGAUGAUGAUGAUGAUGGGGCGGGUA
....(((..((.......(((((......)))))(((((((((((.(..(((....------.)))..)))))))))))).))..))).... ( -30.70, z-score =  -2.32, R)
>consensus
CAAAUGUUUCGAUUUAUUUGCCUCCAAAUCUGCACAUCGUCGUCGCUUGUCCAAUGAUGAUGCUGAUGAUGAUGACGGCGAUGGGGCGGGUA
((((((........)))))).......((((((.(((((((((((((..((.............))..).).)))))))))))..)))))). (-28.26 = -27.70 +  -0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:24:09 2011