| Sequence ID | dm3.chrX |
|---|---|
| Location | 7,620,102 – 7,620,196 |
| Length | 94 |
| Max. P | 0.534696 |
| Location | 7,620,102 – 7,620,196 |
|---|---|
| Length | 94 |
| Sequences | 4 |
| Columns | 94 |
| Reading direction | reverse |
| Mean pairwise identity | 92.51 |
| Shannon entropy | 0.11822 |
| G+C content | 0.44892 |
| Mean single sequence MFE | -27.78 |
| Consensus MFE | -21.67 |
| Energy contribution | -22.43 |
| Covariance contribution | 0.75 |
| Combinations/Pair | 1.03 |
| Mean z-score | -1.95 |
| Structure conservation index | 0.78 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.08 |
| SVM RNA-class probability | 0.534696 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 7620102 94 - 22422827 AAACAUAAAGCACUGCGACCGAGCAAUCGGAUAUAGUUUACAUAUUUACAGAAUGUAUGGCUUUGUUGGCAGGCAUCAAUCAGUUGUCGCUGGC ......(((((((((...((((....))))...))))...(((((.........))))))))))((..((.((((.(.....).))))))..)) ( -23.50, z-score = -0.85, R) >droSec1.super_24 825162 92 - 912625 AAACAUACAGCACUGCGACCGAGCAAUCGGAUAUAGUUUACAUAUUUACA-AAUGUAUUGCUUUG-UGGCAGGCAACAAUCGUUUGUCGCUGGC .......((((((.((((((((....))))........(((((.......-.)))))))))...)-)(((((((.......))))))))))).. ( -25.60, z-score = -1.80, R) >droYak2.chrX 8072387 93 + 21770863 AAGCAGAAGGCACUGCGACCGAGCAAUCGGAUAUAGUUUACAUAUUUACA-GAUGUAUGGCUUUGUUGGCAGGCAACAAUCGGUUGUCGCUGGC ..((((......))))..((((....))))....(((((((((.......-.))))).))))..((..((.((((((.....))))))))..)) ( -28.30, z-score = -1.80, R) >droEre2.scaffold_4690 16539645 93 - 18748788 AAGCAGAAGGCACUGCGGCCGAGCAAUCGGUUAUAGUUUACAUAUUUACA-AAUGUAUGGCUUUGUUGGCAGGCAACAAUCGGUUGUCGCUGGC ......(((((((((..(((((....)))))..))))...(((((.....-...))))))))))((..((.((((((.....))))))))..)) ( -33.70, z-score = -3.35, R) >consensus AAACAGAAAGCACUGCGACCGAGCAAUCGGAUAUAGUUUACAUAUUUACA_AAUGUAUGGCUUUGUUGGCAGGCAACAAUCGGUUGUCGCUGGC ......(((((((((...((((....))))...)))).(((((.........)))))..)))))((((((.((((((.....)))))))))))) (-21.67 = -22.43 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:24:08 2011