| Sequence ID | dm3.chrX |
|---|---|
| Location | 7,608,967 – 7,609,037 |
| Length | 70 |
| Max. P | 0.660503 |
| Location | 7,608,967 – 7,609,037 |
|---|---|
| Length | 70 |
| Sequences | 5 |
| Columns | 71 |
| Reading direction | reverse |
| Mean pairwise identity | 82.24 |
| Shannon entropy | 0.32449 |
| G+C content | 0.41514 |
| Mean single sequence MFE | -20.06 |
| Consensus MFE | -10.78 |
| Energy contribution | -11.98 |
| Covariance contribution | 1.20 |
| Combinations/Pair | 1.20 |
| Mean z-score | -2.16 |
| Structure conservation index | 0.54 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.36 |
| SVM RNA-class probability | 0.660503 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 7608967 70 - 22422827 GCACAGAUGUUGGCUUAAUAAAGUUAUAAUAAAGGUAGCUUAGCUGACGGCAGCUGUGGAACAAUGGAUU- .(((((.(((..(((.....(((((((.......))))))))))..)))....)))))............- ( -19.30, z-score = -2.43, R) >droSec1.super_24 814049 70 - 912625 CCACAGAUGUUGGCUUAAUAAAGUUAUAAUAAAGGUAGCUUAGCUGACGGCAGCUGUGGUACAAUGGAUU- ((((((.(((..(((.....(((((((.......))))))))))..)))....))))))...........- ( -21.70, z-score = -3.02, R) >droYak2.chrX 8059112 70 + 21770863 ACACAGCUGUUGGCUUAAUAAAGUUAUAAUAAAGGUAGCUUAGCUGACGGCAGAUGUGGCAGCAUGGAGU- .(((((((((..(((.....(((((((.......))))))))))..)))))...))))............- ( -21.10, z-score = -2.01, R) >droEre2.scaffold_4690 16528471 70 - 18748788 GCACAGAUGCUGGCUUAAUAAAGUUAUAAUAAAGGUAGCUUAGCUGACGGCAGCUGU-GCAACAUUGGAUU ((((((.((((((((.....(((((((.......))))))))))...))))).))))-))........... ( -22.30, z-score = -2.44, R) >dp4.chrXL_group1e 11624133 67 - 12523060 GCACAGAUGUUGGCUUAAUAAAGUUAUAACAAAGGUGUUCCGGC--AC-CCAUCUAGGGGACAAUGGAAA- ((((...(((((((((....))))..)))))...))))((((..--.(-((.....))).....))))..- ( -15.90, z-score = -0.88, R) >consensus GCACAGAUGUUGGCUUAAUAAAGUUAUAAUAAAGGUAGCUUAGCUGACGGCAGCUGUGGCACAAUGGAAU_ .(((((.((((((((.....(((((((.......))))))))))...))))).)))))............. (-10.78 = -11.98 + 1.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:24:06 2011