| Sequence ID | dm3.chrX |
|---|---|
| Location | 7,597,510 – 7,597,561 |
| Length | 51 |
| Max. P | 0.925972 |
| Location | 7,597,510 – 7,597,561 |
|---|---|
| Length | 51 |
| Sequences | 4 |
| Columns | 54 |
| Reading direction | forward |
| Mean pairwise identity | 96.19 |
| Shannon entropy | 0.06009 |
| G+C content | 0.46351 |
| Mean single sequence MFE | -13.30 |
| Consensus MFE | -12.57 |
| Energy contribution | -12.82 |
| Covariance contribution | 0.25 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.88 |
| Structure conservation index | 0.95 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.32 |
| SVM RNA-class probability | 0.925972 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 7597510 51 + 22422827 UACAGGGUAUAAUCAACGACAAAGCGUUGUCGAUAUUCUGCGCC---UCGUUUC ..((((((((...(((((......)))))...))))))))....---....... ( -13.50, z-score = -2.18, R) >droSim1.chrX_random 2314065 51 + 5698898 UACAGGGUAUAAUCAACGACAAAGCGUUGUCGAUAUUCUGCGCC---UCGUUUC ..((((((((...(((((......)))))...))))))))....---....... ( -13.50, z-score = -2.18, R) >droYak2.chrX 8047209 51 - 21770863 UACAGGGCAUAAUCAACGACAAAGCGUUGUCGAUAUUCUGCGCC---UCGUUUC .((((((((.(((...((((((....))))))..))).))).))---).))... ( -12.70, z-score = -1.73, R) >droEre2.scaffold_4690 16516827 54 + 18748788 UACAGGGUAUAAUCAACGACAAAGCGUUGUCGAUAUUCUGCGCCGCCUCGUUUC ..((((((((...(((((......)))))...)))))))).............. ( -13.50, z-score = -1.40, R) >consensus UACAGGGUAUAAUCAACGACAAAGCGUUGUCGAUAUUCUGCGCC___UCGUUUC ..((((((((...(((((......)))))...)))))))).............. (-12.57 = -12.82 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:24:03 2011