| Sequence ID | dm3.chrX |
|---|---|
| Location | 7,583,870 – 7,583,961 |
| Length | 91 |
| Max. P | 0.826669 |
| Location | 7,583,870 – 7,583,961 |
|---|---|
| Length | 91 |
| Sequences | 5 |
| Columns | 94 |
| Reading direction | forward |
| Mean pairwise identity | 75.76 |
| Shannon entropy | 0.41984 |
| G+C content | 0.64031 |
| Mean single sequence MFE | -39.60 |
| Consensus MFE | -27.94 |
| Energy contribution | -29.42 |
| Covariance contribution | 1.48 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.32 |
| Structure conservation index | 0.71 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.82 |
| SVM RNA-class probability | 0.826669 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 7583870 91 + 22422827 AUGGUGCGGUAUCCAUGGGCGGCAGCCACUGUUGCUGCUGCUGCUGCCACCACAGAAGUGGUCGUGGAGGGCACCGCUACUGUUCCG---GAUU ((((((((((.(((((((((((((((....((....)).)))))))))(((((....)))))))))))....))))).)))))....---.... ( -42.00, z-score = -1.57, R) >droSim1.chrX 6064551 91 + 17042790 AUGGUGCGGUAUCCAUGGGCGGCAGCCACUGUUGCUGCUGCUGCUGCCACCACAGAAGUGGGCGUGGAGGGCACCGCUACUGUUCCG---GAUU ((((((((((.(((((((((((((((....((....)).))))))))).((((....)))).))))))....))))).)))))....---.... ( -41.80, z-score = -1.16, R) >droSec1.super_24 789758 91 + 912625 AUGGUGCGGUAUCCAUGGGCGGCAGCCACUGUUGCUGCUGCUGCUGCCACCACAGAAGUGGGCGUGGAGGGCACCGCUACUGUUCCG---GAUU ((((((((((.(((((((((((((((....((....)).))))))))).((((....)))).))))))....))))).)))))....---.... ( -41.80, z-score = -1.16, R) >droEre2.scaffold_4690 16503112 88 + 18748788 AUGGUGCGGUAUCCAUGGGCGGCAGCCACUGUUCCUGCU------GCCACCACGGAAGUGGACGUUGAGGCCACCGCUACCGUGCCGCCGGAUU ..((..(((((.(..(((.(((((((..........)))------))).((((....)))).......).)))..).)))))..))........ ( -40.20, z-score = -1.49, R) >droVir3.scaffold_12970 3864043 70 + 11907090 ACGCUGCGAUAACCGUGAGCGGCAGCUGCCGCUGCUGC---------CACCACGGCGCUUGUUGUGGCCGCCGCCGUUU--------------- ..((..(((((((((((.((((((((....))))))))---------...)))))...))))))..))...........--------------- ( -32.20, z-score = -1.20, R) >consensus AUGGUGCGGUAUCCAUGGGCGGCAGCCACUGUUGCUGCUGCUGCUGCCACCACAGAAGUGGGCGUGGAGGGCACCGCUACUGUUCCG___GAUU ((((((((((.(((((((((((((((....)))))))))..........((((....)))).))))))....))))).)))))........... (-27.94 = -29.42 + 1.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:24:01 2011