| Sequence ID | dm3.chrX |
|---|---|
| Location | 7,563,892 – 7,563,996 |
| Length | 104 |
| Max. P | 0.794877 |
| Location | 7,563,892 – 7,563,996 |
|---|---|
| Length | 104 |
| Sequences | 6 |
| Columns | 108 |
| Reading direction | forward |
| Mean pairwise identity | 81.53 |
| Shannon entropy | 0.35807 |
| G+C content | 0.53034 |
| Mean single sequence MFE | -34.12 |
| Consensus MFE | -28.06 |
| Energy contribution | -29.40 |
| Covariance contribution | 1.34 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.20 |
| Structure conservation index | 0.82 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.71 |
| SVM RNA-class probability | 0.794877 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 7563892 104 + 22422827 --CUCCGCAUUGCGUUCCAUUCCGC--UGAACGUGUGCGGCUGAUUGAUGUUUUUGCUGUGGCAGCCACAAAAACAUGCCGCAGGACAUCACACAGGAAAUUCAAUGG --..((((((.((((((........--.))))))))))))(((..(((((((....((((((((............)))))))))))))))..)))............ ( -35.50, z-score = -1.67, R) >droPer1.super_14 1026534 107 + 2168203 CGCCCCGCCUCGCCCCCUUGUUCGCGUUGAACGUGUGCGGCUGAUUGAUGUUUGUGCUGUGGCAGCCACAAAA-CAUGCCGCAGGACAUCACACAGGAAAUUCUAUGG ....(((((.(((.....(((((.....))))).))).)))....((.(((.(((.((((((((.........-..)))))))).)))..)))))))........... ( -31.30, z-score = 0.47, R) >droAna3.scaffold_13117 400832 83 + 5790199 ------------CUCCACUCUGCGGCAGGGCAGGGCAGGGCUGAUUGAUGUUUUUGCUGUGGCAGCCACAAAAACAUGCCGCAGGACAUCA-GUGG------------ ------------(((..((((((......))))))..)))...(((((((((....((((((((............)))))))))))))))-))..------------ ( -31.40, z-score = -0.98, R) >droEre2.scaffold_4690 16481704 105 + 18748788 -ACUCCGCAUUGCGUUCCAUUCCGC--UGAACGUGUGCGGCUGAUUGAUGUUUUUGCUGUGGCAGCCACAAAAACAUGCCGCAGGACAUCACACAGGAAAUUCAAUGG -...((((((.((((((........--.))))))))))))(((..(((((((....((((((((............)))))))))))))))..)))............ ( -35.50, z-score = -1.70, R) >droSec1.super_24 770835 104 + 912625 --CUCCGCAUUGCGUUCCAUUCCGC--UGAACGUGUGCGGCUGAUUGAUGUUUUUGCUGUGGCAGCCACAAAAACAUGCCGCAGGACAUCACACAGGAAAUUCAAUGG --..((((((.((((((........--.))))))))))))(((..(((((((....((((((((............)))))))))))))))..)))............ ( -35.50, z-score = -1.67, R) >droSim1.chrX 6051899 104 + 17042790 --CUCCGCAUUGCGUUCCAUUCCGC--UGAACGUGUGCGGCUGAUUGAUGUUUUUGCUGUGGCAGCCACAAAAACAUGCCGCAGGACAUCACACAGGAAAUUCAAUGG --..((((((.((((((........--.))))))))))))(((..(((((((....((((((((............)))))))))))))))..)))............ ( -35.50, z-score = -1.67, R) >consensus __CUCCGCAUUGCGUUCCAUUCCGC__UGAACGUGUGCGGCUGAUUGAUGUUUUUGCUGUGGCAGCCACAAAAACAUGCCGCAGGACAUCACACAGGAAAUUCAAUGG ....(((((.(((((((...........))))))))))))(((..(((((((....((((((((............)))))))))))))))..)))............ (-28.06 = -29.40 + 1.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:23:59 2011