| Sequence ID | dm3.chrX |
|---|---|
| Location | 7,551,854 – 7,551,913 |
| Length | 59 |
| Max. P | 0.992409 |
| Location | 7,551,854 – 7,551,913 |
|---|---|
| Length | 59 |
| Sequences | 8 |
| Columns | 74 |
| Reading direction | reverse |
| Mean pairwise identity | 71.27 |
| Shannon entropy | 0.50691 |
| G+C content | 0.41011 |
| Mean single sequence MFE | -9.11 |
| Consensus MFE | -5.37 |
| Energy contribution | -5.26 |
| Covariance contribution | -0.11 |
| Combinations/Pair | 1.17 |
| Mean z-score | -2.22 |
| Structure conservation index | 0.59 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.54 |
| SVM RNA-class probability | 0.992409 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 7551854 59 - 22422827 --UUCCUCCCGCAUUUCGUUUUACCCUUUGCAU--AACAAUUGACAAAGCAGUCAAUAUACAU----------- --........(((...............)))..--....((((((......))))))......----------- ( -6.96, z-score = -2.51, R) >droPer1.super_14 1012738 53 - 2168203 --------ACCCUUUCGGCUUUACCCUUUGCAU--AACAAUUGACAAAGCAGUCAAUACACAG----------- --------........((((.....(((((((.--......)).))))).)))).........----------- ( -6.30, z-score = -1.22, R) >dp4.chrXL_group1e 11558220 53 - 12523060 --------ACCCUUUCGGCUUUACCCUUUGCAU--AACAAUUGACAAAGCAGUCAAUACACAG----------- --------........((((.....(((((((.--......)).))))).)))).........----------- ( -6.30, z-score = -1.22, R) >droAna3.scaffold_13117 390826 55 - 5790199 -------CUCCCAGCAAG---UAUCCUUUGCAU--AACAAUUGACAAAGCAGUCGAUACACGCACAU------- -------......((..(---((((..((((..--.............))))..)))))..))....------- ( -10.26, z-score = -2.65, R) >droEre2.scaffold_4690 16468859 70 - 18748788 --UUCCUGCCGCAGUUCGUUUUACCCUUUGCAU--AACAAUUGACAAAGCAGUCAAUAUACAUACAACAUACAU --........((((.............))))..--....((((((......))))))................. ( -7.72, z-score = -0.93, R) >droSec1.super_24 758923 60 - 912625 -UUCUCUCCCGCAUUUCGUUUUACCCUUUGCAU--AACAAUUGACAAAGCAGUCAAUAUACAU----------- -.........(((...............)))..--....((((((......))))))......----------- ( -6.96, z-score = -2.32, R) >droSim1.chrX 6039755 61 - 17042790 UUCCUCUCCCGCAUUUCGUUUUACCCUUUGCAU--AACAAUUGACAAAGCAGUCAAUAUACAU----------- ..........(((...............)))..--....((((((......))))))......----------- ( -6.96, z-score = -2.48, R) >droMoj3.scaffold_6473 8323348 57 - 16943266 -----GGCUGGCAGUCAG-UCUGCCAGCAGCCCCAAACAAUUGACAAAGCAGUCAAUACACAC----------- -----.((((((((....-.))))))))...........((((((......))))))......----------- ( -21.40, z-score = -4.41, R) >consensus _____CUCCCGCAUUUCGUUUUACCCUUUGCAU__AACAAUUGACAAAGCAGUCAAUACACAU___________ .......................................((((((......))))))................. ( -5.37 = -5.26 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:23:58 2011