| Sequence ID | dm3.chrX |
|---|---|
| Location | 7,542,697 – 7,542,804 |
| Length | 107 |
| Max. P | 0.700202 |
| Location | 7,542,697 – 7,542,804 |
|---|---|
| Length | 107 |
| Sequences | 3 |
| Columns | 107 |
| Reading direction | reverse |
| Mean pairwise identity | 91.48 |
| Shannon entropy | 0.11780 |
| G+C content | 0.32598 |
| Mean single sequence MFE | -13.00 |
| Consensus MFE | -10.14 |
| Energy contribution | -10.37 |
| Covariance contribution | 0.22 |
| Combinations/Pair | 1.05 |
| Mean z-score | -2.15 |
| Structure conservation index | 0.78 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.45 |
| SVM RNA-class probability | 0.700202 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 7542697 107 - 22422827 AUUAUGAAAUCAAUAUACCAAUGUAUAUUCUUAUACGACAAAAAAUGUGUUUCUUUUUUUUUUGAAAACCACUCAGAUUUCUUCAAGCCCCCGCGCCAAUAUCCCAU .....((((((..........((((((....)))))).(((((((............)))))))...........)))))).....((....))............. ( -12.80, z-score = -1.84, R) >droSec1.super_24 749990 103 - 912625 ACUAUGAAAUCACUAUACAUAUGUAUAUUCUUAUACUACAAAUAAUGUGUUUC----UUCUUUGAAAACCACUCAGAUUUCUUUAAGCCCCCGCGCCAAUAUCCCAU .....((((((...........(((((....)))))..........(((((((----......))))..)))...)))))).....((....))............. ( -12.40, z-score = -2.33, R) >droSim1.chrX 6031284 103 - 17042790 AUUAUGAAAUCAGUAUACAUAUGUAUAUUCUUAUACUACAAAUAAUGUGUUUC----UUCUUUGAAAACCACUCAGAUUUCUUUCAGCCCCCGCGCCAAUAUCCCAU .....(((((((((((((....))))))).................(((((((----......))))..)))...)))))).....((....))............. ( -13.80, z-score = -2.28, R) >consensus AUUAUGAAAUCAAUAUACAUAUGUAUAUUCUUAUACUACAAAUAAUGUGUUUC____UUCUUUGAAAACCACUCAGAUUUCUUUAAGCCCCCGCGCCAAUAUCCCAU .....(((((((((((((....))))))).................(((((((..........))))..)))...)))))).....((....))............. (-10.14 = -10.37 + 0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:23:56 2011