| Sequence ID | dm3.chrX |
|---|---|
| Location | 7,530,608 – 7,530,698 |
| Length | 90 |
| Max. P | 0.588635 |
| Location | 7,530,608 – 7,530,698 |
|---|---|
| Length | 90 |
| Sequences | 5 |
| Columns | 105 |
| Reading direction | reverse |
| Mean pairwise identity | 73.95 |
| Shannon entropy | 0.46294 |
| G+C content | 0.38867 |
| Mean single sequence MFE | -22.42 |
| Consensus MFE | -12.98 |
| Energy contribution | -13.74 |
| Covariance contribution | 0.76 |
| Combinations/Pair | 1.18 |
| Mean z-score | -1.22 |
| Structure conservation index | 0.58 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.20 |
| SVM RNA-class probability | 0.588635 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 7530608 90 - 22422827 -------GGUUCCGUCUCUG-AAAGACAUUUGCAAUUGUUUUCUAUGUUU-------CAAGGAGACGAAAGACAACCAGCAACUUAGUUGCAACUUGAAAUGCAA -------((((.(((((((.-..((((((..((....)).....))))))-------...)))))))......)))).(((((...))))).............. ( -21.10, z-score = -1.03, R) >droSim1.chrX_random 2293604 90 - 5698898 -------UUUUCCGUCUCUC-AAAGACAUUUGCAAUUGUUUUCUAUGUUU-------CAAGGAGACGAAAGACACACUGCAACUUAGUUGCAACUUGAAAUGCAA -------......((((...-..))))..(((((.(((((((((......-------..))))))))).........((((((...))))))........))))) ( -20.10, z-score = -1.28, R) >droSec1.super_24 737988 90 - 912625 -------GGAUCCGUCUCUC-AAAGACAUUUGCAAUUGUUUUCUAUUUUU-------CAAGGAGACGAAAGACACACUGCAACUUAGUUGCAACUUGAAAUGCAA -------......((((...-..))))..(((((.(((((((((......-------..))))))))).........((((((...))))))........))))) ( -20.10, z-score = -1.38, R) >droYak2.chrX 7978632 103 + 21770863 AAAUCUUCCGUCCGUCGCACAAAAGACAUUUGCAAUUGUUUUCUAGAUGUUUUGAAGUAGACACACUGCAACUUAGUUGCA--UUAGUUGCAACAUGAAAUGCAG .............(((..((..((((((((((.((.....)).))))))))))...)).)))...(((((..(((((((((--.....)))))).)))..))))) ( -25.70, z-score = -1.81, R) >droEre2.scaffold_4690 16447141 102 - 18748788 GGUACCGUGGUCCGUUUCUC-AAAGACACUUGCAAUUGUUUUCUAUUUUUCCUGUUACAAGCAGACGAGAGA--CACUGCAACUUAGUUGCAACGUGAGAUGCAA ......(..((..(((((((-.((((((........)))))).........((((.....))))..))))))--)))..).......(((((.(....).))))) ( -25.10, z-score = -0.61, R) >consensus _______GGGUCCGUCUCUC_AAAGACAUUUGCAAUUGUUUUCUAUGUUU_______CAAGGAGACGAAAGACACACUGCAACUUAGUUGCAACUUGAAAUGCAA .............(((........)))..(((((.(((((((((...............)))))))))..........(((((...))))).........))))) (-12.98 = -13.74 + 0.76)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:23:54 2011