| Sequence ID | dm3.chrX |
|---|---|
| Location | 7,503,852 – 7,503,947 |
| Length | 95 |
| Max. P | 0.782032 |
| Location | 7,503,852 – 7,503,947 |
|---|---|
| Length | 95 |
| Sequences | 3 |
| Columns | 105 |
| Reading direction | reverse |
| Mean pairwise identity | 81.37 |
| Shannon entropy | 0.25123 |
| G+C content | 0.34198 |
| Mean single sequence MFE | -17.23 |
| Consensus MFE | -14.30 |
| Energy contribution | -13.20 |
| Covariance contribution | -1.10 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.54 |
| Structure conservation index | 0.83 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.67 |
| SVM RNA-class probability | 0.782032 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 7503852 95 - 22422827 CUUUCGGGCUUUUCGCGUUACGCUCCCUAAACUUUUCACUUUGAAU--ACA--------CAAUACUGUAUGAAUCGAAUUCAUUUCAUUCAUAUAAAGUUAGAAA ..((((((......(((...))).)))..((((((((.....))).--...--------......(((((((((.(((.....))))))))))))))))).))). ( -15.10, z-score = -1.62, R) >droEre2.scaffold_4690 16419289 104 - 18748788 -CUUUCAGCUUCUUGCGAAACGAGCGCUAAACUUUUCACUUUGAAUUCACAAUUCGGUGUAAUACUGUAUGAAUCGAAUUCGUUUCAUUCAUACAAAGUUAGAAG -.....(((..((((.....)))).)))...(((((.(((((..((((((......))).)))...((((((((.(((.....)))))))))))))))).))))) ( -21.10, z-score = -1.31, R) >droSec1.super_24 711557 96 - 912625 -CUUUGGGCUUUUCGCGUAACGCUCCCUUAACUUUUCACUUUGAAUACACA--------CAAUACUGUAUGAAUCGAAUUAAUUUCAUUCAUAUAAAGUUAGAAG -....(((......(((...))).)))((((((((((.....)))......--------......(((((((((.(((.....)))))))))))))))))))... ( -15.50, z-score = -1.68, R) >consensus _CUUUGGGCUUUUCGCGUAACGCUCCCUAAACUUUUCACUUUGAAU_CACA________CAAUACUGUAUGAAUCGAAUUCAUUUCAUUCAUAUAAAGUUAGAAG .((((.(((((.......................(((.....)))....................(((((((((.(((.....))))))))))))))))).)))) (-14.30 = -13.20 + -1.10)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:23:53 2011